BtaINT0079565 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30446093-30446932:-
Coord C1 exon
chr5:30446601-30446932
Coord A exon
chr5:30446200-30446600
Coord C2 exon
chr5:30446093-30446199
Length
401 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTGGCGCCTGCGTCCGCAGGGT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GCGGACACCAGCTCCCTGAGTGGCGACAACACCCTCATGTCCACCCTGGAGGAGAAGGAGACAGACGGGGAGCAGGGCCCCGCAGCCTCCCCAGCCCCAGCTGATGAGCCCTCCAGCCCCCTGCTGTCCCCTGGCTGCACCTCCTCGTCCTCAGCTGCCAAGCTGCTATCCCCGCGGCGAACTGTGCCCCGGTCCCGGCTGGGTGGCAGAGGGCGGCCAGGCAGGGCTGGGGCTTTGCAGGCTGAGGCCGGCCCCTCAACTCACCCTCGGAGCTTGGAGGGGCTGCGGCTGCCCCCCGTGCCATGGAATGTGCCCCCAGATCTGAGCCCCAG
Seq A exon
GTGAGCGAGCTCTGGGCCACTGAAGTCAGGCAGAGCTAGTGACAGGGCTGGGTCCCCAGCCAGCCACACTGCTGCCCTGGATGCCCATCCTTCCATCCTAACCCCTCTCAGCCTCCTCCAGGAAGCCCCCTTGACTACCCCACCTCCTCCCTGCCCCAACTCCACCATTCAGGCCATGCACTGCTCAGAACTCTTGCTGTTTCATACCGCTCAAGCTAGAAACTGCAAGCTCCTAGGGAAAAAGGGACCACGTGTTCCACCCTTCTCTTGGGACCCCAAGCCCCTGGCCTAGCTCCAGCTCTTGTAGCTTCTGTGGACAGTGGGGCATCTTGTCCTGTAAAACAGAACACTGCAGTGTCTGTCTGTTGACTGATTTGTTGCCCTGGCGCCTGCGTCCGCAG
Seq C2 exon
GGTCGTAGATGGGATTGAGGACGGCTGTGGCTCCGACCAGCCCCAGTTCTCCTTCCGTGTGAGGCAGTCTGGCCCGGAATGTAGCAGCAGCCCTTCTCCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277:ENSBTAT00000025668:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGGAGAAGGAGACAG
R:
CTCACACGGAAGGAGAACTGG
Band lengths:
352-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]