RnoINT0077739 @ rn6
Intron Retention
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140907318-140908645:+
Coord C1 exon
chr7:140907318-140907649
Coord A exon
chr7:140907650-140908538
Coord C2 exon
chr7:140908539-140908645
Length
889 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGATTTCCTGGGTCCGCAGGGT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTGGATACCAGCTCACTGAGTGGTGACAACACCCTCATGTCCACACTGGAGGAGAAGGAGACAGACGGGGAGCAAGGACACACGATCTCACCAGCCCCAGCAGATGAGCCCTCCAGCCCCCTGCTGTCACCTGGCTGTACCTCCTCCTCCTCAGCGGCCAAACTACTCTCCCCACGTCGAACTGCACCCCGGCCGAGGCTGGGTGGCAGAGGGCGGCCAAGTAGGGCAGGGGTTTTGAAGCCTGAGGCTGGTCCTTCTGCTCATCCACGGACACTTGATGGGTTGCAGCTGCCCCCCATGCCATGGAATGTACCTCCAGACCTGAGCCCCAG
Seq A exon
GTGAGCAGGCCCTGGACCTCATGGCAAGATGGTGGTGGTTAGGACAGAGGTACCCGCTAGGCACACCCTCACCTGGGTGTTGCTCTTTTGTTTGAGACTATGTAACCCAGGTCGATTTCCACTTTGATCCTCCTGATTCTGTCTTCCGAGTGCTGGGATTACAGATGTCTGCCATGCCTGGCATCATGTTGCCGCCGCTACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCTGCCTCCTCCTCCTCCTACCTCTCCTCCATTTTATTTTTGATAGGTTGGAAGGCAGGGGACTGTGCACTTGAGTCTCTGCCCTCAGAGGCCAGAAGAGGGCATTGAGTCTCCTGGAACTGCAGTAATAGGTGTTTTTGAGCTGTTCTATGCAAGTTCTCTGCAAGAACAAAACAGGCACTTAACTGATTTGTGTAGTTTTACGATCTATCCGTCTTTGCTCCTGGAAGTGGCCACATTACCCAGCACCCCCCCCCTCCCCCGCATCCTTGGGCTTCCCTTAAATCCTCGGATAAAAGACACAGACAGTCTTTCAATCACAACTTGCCGTCTTGGCACAATTGCAGAGGTATCACTTCAGGCCCCATCCTTCCAGCCATTATGGTCCACACCTGCCTTCCTTCCCAGATTCCTGCTATCCCAATACCTGGTTAGAGGCGGCTTACCTTGAACTCCTGTTTTGTGTTACACCAATGTACTCTTCAGCTAATCGCAAGCTCCTAGGAAAAGGGACCGTATCCTAGCATCTTAGGATGCCCAGGACCCCTGGCCAACACCTGTGACCACTGGAGTTTCCCATCCTGACACCACAGTAGACGCCTGTCATCTGATTTGATGTCCTGCCTTTTGATTTCCTGGGTCCGCAG
Seq C2 exon
GGTCGTAGATGGCATTGAGGATGGCTGCGGCTCTGACCAGCACAAGTTCTCTTTCCGGGTGGGTCAGTCTGGCCCAGAATGTAGCAGCAGCCCCTCCCCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315:ENSRNOT00000086611:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGAGACAGACGGGGAG
R:
CCCACCCGGAAAGAGAACTTG
Band lengths:
344-1233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]