BtaINT0079576 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42936192-42938502:-
Coord C1 exon
chr19:42938427-42938502
Coord A exon
chr19:42936426-42938426
Coord C2 exon
chr19:42936192-42936425
Length
2001 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TTAACCCCTTCTTCCCACAGACA
3' ss Score
12
Exon sequences
Seq C1 exon
ATGCCGGTCATGAAGGGGTTGCTGGCCCCGCAGAACACCTTCCTGGACACCATCGCCACCCGCTTCGACGGCACGC
Seq A exon
GTGAGTGGGGTGGAGGCTGGAGCTGAGGGTTCGAGCTAGAGGTCAAGTCTCCTTTGGCGCTCGCGTGGGTCTCCTGAATATGATGAGGAGAATGGGCTAGGAGGGTCTAGGAACTCCCAGAGCCCCAGTAAAGGAGCAGGACTGGCAGCGCCCTGGGAGGGGAGACGCGGAGAGGACCAAGAGTGCGGGCAGCCAAGGTTGGGGGTGTGTGACAGGAGGCAGGAAAGGTTCTTTGTGCGGAAAAGCGGAGGAGTCCTTGAGAGCCGCCCACTCTCGGGCAGGGCTCTGCTGGGGGCGTGTACGGGAGTATCCAAGACGCGGAGGTGAGACGAAGTGGCCAGGTGCTTTGGGGTCTGCTCCCCGACTGCAGCATCTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATGTAAGGGAGAGAACTGCGGGCCCTCCCAACCGAGCTTGAGTTCCAGGTTCAGCACCTTGGACAGCCACCATCCTCCTTCCCCCTCCTCTTCTCCCGCCATTCCCTTTTCCTACTTTGGAACTGAACCATCTCCCCTTGCCCGATTCGGACACCCCGCCTGAGATCTGGAAGGTAGGGGGAGCGGTACCTGAGGGAGAAAACAGCCGCCGGGGCCCTACCCTCCTCCCCACCCTGCCCCCACACACACCTCCCTTGTTTCCATAGTGCCTGTCACCCGGGCAACGGACCTGGGATGGAAGAAGGAGGCTGCTTGCCCAGGGCCCAGCACCTCCCAGGCACCTTCAGTATCCTCATCAGCTGCTCCATCCCCAGACATTCACCGCTCCTAGCACCCCAGGACTGATTCTTCTCAGATCCCTTCCTTCAGCTGAGACGATCCCTAGATGGCCTACCGAGCCCCCCTGAGGCCTCCCACCCAGTGGGACTGGAGGGGAGCCAGCTCAGGTTCTGTTGCTGGGTTTGCTGGAGCCACAACTTCATTGCTCAAGCCTGTCAAACTTTGAGAACTGGGATAGACCCCCTGAACTTAGCTAAGGGATGCTAAAAAGAGGACTTTTCCTGGAAGGCAGGGAATGAGGATGCTATTCATCACTGTCTTCCTCCCTCCACAAAGGAGACTGGATAATAAACTCTGTGAGTTTGGATAACCTCTGCTTTTTGGTTTCCTATCAGTAAAATGGGTGTGATAATGCCAGAATCTCTGCCTTATCCAGGATAGCAGCTATGGATTGTGCTTTGAAAGCTGGGCAAATGTGGGGCATCATTTCACCTTCTCAGTGTAGCACTTACTATGTGCCAGGATTTGCTCTTCCCAGGTAACCCATGTAACTCACACCAAACATTTTGAGGAAGATATATAATCCCTCACTTTTCAGATAAGGAAGCTGAGGCCCAGAGGAGTTCATTAACTTGTTCAAAGTTATACAGTCAGCAAGTGGTAGGGATAGGGTGCTGGAGCCCATGCTCTTACTCACCATGCTGTGCTGCTGCCTACAGTAACAGCTCATCAGCTTCAAGGCAGAAGTCATGACCTCTTGGAGTTCCTTTTCCAACCCCCTAGACTACCCTGTTCCAGTTCCAGGCCACCCTTAAGTCCTGGTCCTTTTGCTCTATCTCTTCTTACTCTCATTTCAGGATATCCCAAAGGGGATCCAGGAATCCCATGGAAACCTGGGAAGCTCCTGTCTCTAGGATCTCTGACCTCAGCTTGGGGGAGGTATGGCTCACCTGGAATCTGAGCTCCCCTCTTGGCCTTGGCCTGACTTTAACCCCTTCTTCCCACAG
Seq C2 exon
ACAGCAACTTCCTGCTGGCTAACGCACAGGGCCCACGGGGCTTTCCCATTGTCTACTGTTCCGACGGCTTCTGCGAGCTCACAGGCTACGGCCGCACCGAGGTCATGCAGAAAACCTGCAGCTGCCGCTTCCTGTACGGTCCAGAGACCAGTGAGCCAGCCCTGCAGAGGCTGCACAAGGCTCTGGAGGGCCATCAGGAGCACCGCGCTGAAATCTGCTTCTACCGAAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195:ENSBTAT00000005335:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(70.6=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development