BtaINT0079579 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42925116-42925704:-
Coord C1 exon
chr19:42925666-42925704
Coord A exon
chr19:42925469-42925665
Coord C2 exon
chr19:42925116-42925468
Length
197 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
GCTGCATCCTCTGCCCACAGCCC
3' ss Score
8.2
Exon sequences
Seq C1 exon
GGCCTCTGCCGCTTTTCCCGGTCCCCTCGCCTCTCCCAG
Seq A exon
GTAACGCATCCTTCCTGGGTAGGGTTGAAGTCACACGCAGAGGCGGGGGTGCAGGGGGGGTGCACCTTTCCTTGACTGCCCGGCTCCAGGGTGAAGGGAGAGGCGATGGGGGGCGGCAATGCCAGTGGAGGCTGTTGCTTACTTTAGGGGCCCCTTGTCCATTGCCCTGTGACATCGGCTGCATCCTCTGCCCACAG
Seq C2 exon
CCCCGCTCGGATAGCCTGGGCTCCTCCTCAGACAAGACCCAGCCATCCGTCACAGAGGCCGAGGCTGGGGCCGAGCCTGGCGGTGGTCCCAGGCCCCGGCGGCCCATCCTGCTGCCCAACCTCAGTCCAGCGCGGCCCCGGGGCTCCCTGGTCAGCCTCTTGGGGGAGGAGCTGCCCCCTTTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAGCCCCTTCCCCTGCCCTGGCTGGCCGGGGCCACAGCCCCTCCCCTCATGGCCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTTCTCATTCCCCCACTGGGAACCTTTGGACCTCCGGACCTCAGTCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195:ENSBTAT00000005335:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGCCGCTTTTCCCG
R:
GGACAGGGAAGGAGAGGAGAC
Band lengths:
250-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development