RnoINT0077753 @ rn6
Intron Retention
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88652878-88653465:-
Coord C1 exon
chr10:88653427-88653465
Coord A exon
chr10:88653231-88653426
Coord C2 exon
chr10:88652878-88653230
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
GATGCTCCCTCTTCCCTCAGGCA
3' ss Score
10.71
Exon sequences
Seq C1 exon
GGCCTCGGCCGCTTCTCACGTTCTCCTCGACTCTCCCAG
Seq A exon
GTAATCCGTCCGCGTTTCTGGGTGGGGCGAGGTTGTTCTGTGGAGAGGCTGGGAGGTGTGCAGCTTTCCTTAGCTCCTCTGCCACAGGGAGAAGGGACAGGGGACTGGGAGGAGCACCTGGTGCTGAGGCTTGCATCCCAGTGAAGGGTCCTGTTGTCCACTGTCCAGTAACAGCTGATGCTCCCTCTTCCCTCAG
Seq C2 exon
GCACGCTCCGACACTCTTGGTTCCTCCTCAGACAAGACTCTGCCATCCATCACAGAAACCGAGGGTGGCATGGAGCCTGGGGCTGGTTCCAAGCCCCGTCGGCCCCTCCTGCTGCCCAACCTCAGTCCAGCACGACCTCGGGGGTCCCTGGTCAGCCTTTTGGGCGAAGAGCTGCCCCCATTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAACTCCTTCCCCTGCCCTGGCTGGCCGGGGTTCAAGTCCCTCCCTGCACGGGCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTCCTCACCCCCCCACTGGGAACATTTGGACCTCCGGACCTCAGTCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790:ENSRNOT00000025518:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCACGTTCTCCTCGAC
R:
GGACAGGGAAGGAGAGGAGAC
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]