BtaINT0079606 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48512308-48513425:+
Coord C1 exon
chr19:48512308-48512494
Coord A exon
chr19:48512495-48512814
Coord C2 exon
chr19:48512815-48513425
Length
320 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTTTCTTGCCCCCCGCAGATG
3' ss Score
12.35
Exon sequences
Seq C1 exon
GCTGGAGTCCCGCATGTCTTCAGACCTCAGCCGCATCCTGAAGCTCCTTCAGCAGCCCCTTCCCCAGGACCACACTGGCTACATCTTGGGAGCCTCCACCTCTAACGACCTGGCCTTGTTCCCTGCAACCTCAGCAACTCAGAGTCCAGGAACTCGGCTGCCCCGGGGTGACCCACCCCCGGCACAG
Seq A exon
GTGAGCAGTGGAGGGGACCCCCAGGGGCTTGCCTGGTGGCGGCTGCATGTCTTCCCCCACCCTTACCTTGGTCTCAGTGGTCATCTGGCCCAGGGCCTTTGTGGCCTGAGAGCAGCTGTGACTTCTGCTGTCCTCCCTTATGGTCTGAGTCACAACAGGCAGCCTGGACAGGTGGTAGCAGAGCCCAGACTGTGACCACGGACTCCACATCGGGAGCAGAGGCAGCAGGATACATCTCCTGCTGCTTCCCAACCCTGAAGTCAGGGTGCCTTGGGGAGGCTCCCCACCCTGCTTGCCCCCCTCTTTCTTGCCCCCCGCAG
Seq C2 exon
ATGCCCAGCTATGGTGACATGGATGAATGGAGGCCGGAGCTCAGGAACTCTTCCTCTAGGATGCCCCCCTCTGCCGTGGAAATGGACAGAACTCTGACACTGTCCTCGGAACAGAAGCAGCCCGAGGGGCTCCTGTCACCCCTGGCCTCCCCTCTGTGTCCCTTGGAGGTACAGGGACTTGTCTGTGGTCCCCGCTACCCCTCCCTCCCTGAACACCTCAGCTCTGTGCCCAAGCAGTTGGAGTTCCAGAGACATGGCTCAGATCCTGGGTTCTCAAGGAGCTAGAGCCACTGTGCCCCAAGATTTTTTTAAAAAAGCACTATGAAGGAACTGAATGTGGGTAAGGTGATAGTTAAGGATGTGGGGGAGGCAGACAGCCTCTAAACTAGCCCTTCACCTAGAGTAGCTACAAACTGCCAATCCAGGTGACCCCAGATGGTGCGGGTGAAGAGGCTCATGACTTTCCCCAGCCTCCTCCAGGGCTCTCTTTAGACAGCAGGGCTGGTGGAAGGTGGATGAGCCTCAGGCGTGGAGGTAGCTGCCAGGACAGAGGGCTCAGGGAAGAAAGGAGACATTTCTGATCTTTTCTGTATGAGAGCCTGACTCTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.862
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTCTTCAGACCTCAGCC
R:
AAGTCCCTGTACCTCCAAGGG
Band lengths:
356-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development