RnoINT0077779 @ rn6
Intron Retention
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94226477-94228236:+
Coord C1 exon
chr10:94226477-94226657
Coord A exon
chr10:94226658-94227412
Coord C2 exon
chr10:94227413-94228236
Length
755 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TACTTTTCTCTTTCTCCCAGACC
3' ss Score
10.11
Exon sequences
Seq C1 exon
ATTGGAGTCCCGTGTGTCATCAGACCTCAGCCGCATCCTACAGCTGCTTCAGCACCCGCAGGGTCGCCCCAGCTACATCTTGGGAGCCTCTGCCTCCAGTGACCTGGCCTCATTTCCTGAAACTTCAGTGACTCGGAGTTCAGAGTCTACACTTCTGGTGGGACATGTGCCCTCTGCTCAG
Seq A exon
GTGAGAGGTGACAGGATCCCCAGGGTTTCCCTAAAAGTAACTGTGTGATTCCCTGACCCTCAACTCAGCCTCAGTGTGTCTGTAGTAGGATGAGGAAAGTCTTCTGCTGCTAGTTTTATCATTTACATTGCCTGACGGGGCAGCCTAGACTACATCCCCTGACGGGGCAGCCTAGACCAGTGCTGGCAGAGCCCTCACAGTGATCACAGACTTCACAGCTCAGGGAGATTCGATAGGATCCTCAGGAGGAGTTCCCAGTTCCCTGAGGATAAGGAGCAGGCAGAGCTCTTTTCCGTTCCCATCCCAGAGGCTGAAGCAGATCCGTATCCAGCTTAGGGGCTGGGAGAGGTGGCTCGGTTGGGAGAGTGCTTTCCATGCAAGTGTGAGGACCCGAGTTCCCCCGCCACCCATGTTAAAACCTGGGCATGGTACTGTACACTTGTAATTTCAAGGCTGATCAGGTAAAGACAAGTGGTCAGCCAGTCTAGCCTAGTTGACAAGCCCTAGGTCCTTGTGAGAGACCCTGTCACAAAAGCAAGGCAGACATCTCCTGAGCAACATCTGAGACTGACCTCTGGCTTCTACATGTACATGTACTGGTGGACATGCGCACACATACAGACACACACACACACACACACACACACACACACACACACACACTCATGCACAAAATGAAAAAATATCCAGCCTGACTGGAAGTAGGGTAGGGCTCCGCACACAATATGCTCTCTTTACTTTTCTCTTTCTCCCAG
Seq C2 exon
ACCCTAAGCTACGGTGACTTGGACGACCATATTCAGACACCCAGGAATTTCTCCCCCAGGACACCTCACGTGGCCATGGCAATGGACAAAACTCTGGTGCCATCCTCAGAACAAGAGCAACCTGGGGGTCTCCTGTCACCTCTAGCCTCACCTCTGCGTCCCCTGGAAGTACAGGGACTGGGTGGTTCCCGCGTCCCCTCCCTCCCTGAACACCTCAGCTCAGTTCCCAAGCAGCTAGAGTTCCAGAGACACGGTTCCGATCCTGGATTCACAAGGAGTTAGGGCCTTTAGACCCCAGGGTAAAAGCTACCATGAGGGAATTTAAGTACAGTGAGGTGAGAGTTAAGCCCCCTTCGGGGGAGGGCCAGGCAGCTCTCCCATAAAACTCTGAAAACCATTTCCTCAGAGAAACTGTAGACCGCTGAGCCAGTGACCAGGATGATCTGAGCAAAGAGGCTCAGGACTTGGCCCGGGCTCCTTGGGACCCCTGTAGTCAGCAAGCCAGGCAGAGGTTTGCTCAGAGGTAGCTTACAGGATGCCAGTGGAGAATACAGATGCTTCAGATCTCTGGGAGGGTCTTGCTTGGGGCCGCATGTGGTTGGCTCCCAGCTCAGAACCACCTTCTGCCTCAAAAGCCCAGACCCAAGGCCAGGTTTGACCAGACCTTTACCAAAAGCCTCTATCTAATATGGCTGGAATTAGAGGTGTCCTCTGTGGTGGACATAAAAGACAGGGAGCTGCAGCCCTCAGCCCCTCTTCCCCTGAGACTCTCATAACAGTATCTGGGACATGCAGACATAGCTAATAAAGTCTTGAACATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078:ENSRNOT00000010816:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGTCATCAGACCTCAGC
R:
CACCCAGTCCCTGTACTTCCA
Band lengths:
355-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]