HsaINT1017148 @ hg38
Intron Retention
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel subfamily H member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr17:63545078-63546034:+
Coord C1 exon
chr17:63545078-63545264
Coord A exon
chr17:63545265-63545608
Coord C2 exon
chr17:63545609-63546034
Length
344 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTCTTTCTTGCTCCTCCCAGACC
3' ss Score
9.5
Exon sequences
Seq C1 exon
GCTGGAGTCCCGCGTGTCCTCAGACCTCAGCCGCATCTTGCAGCTCCTCCAGAAGCCCATGCCCCAGGGCCACGCCAGCTACATTCTGGAAGCCCCTGCCTCCAATGACCTGGCCTTGGTTCCTATAGCCTCGGAGACGACGAGTCCAGGGCCCAGGCTGCCCCAGGGCTTTCTGCCTCCTGCACAG
Seq A exon
GTAAGAGGTGAGGGGATTCCCAGGGGCTTACCTGCGAGCAGCTGCATGCCTTCCCTACCCTGACTTGTTCACAGTGCAGCATCAGGCCCAGAGCCTCTGTGGCCCCAGAGCAGCCAGGGCTTCTGCTTACCTCCTTTATGATCAGAGTCATGATAGGGTTAGCCTGGGCAAGGTGCTGGCAAAGCCCAGAATGTGACTCCAGAGCCTGCAGCTGGGGCCAGGGCAGCAGGACCCTGAGGTGTGGGAAGGGCAGGTACAATTTTTGCCTGATCCCATCCCTGAAATCAGGGTGGATTAACCCGCAGCCTGGCCTGGGGTGCATCCCTCTTTCTTGCTCCTCCCAG
Seq C2 exon
ACCCCAAGCTATGGAGACTTGGATGACTGTAGTCCAAAGCACAGGAACTCCTCCCCCAGGATGCCTCACCTGGCTGTGGCAACGGACAAAACTCTGGCACCATCCTCAGAACAGGAACAGCCTGAGGGGCTCTGGCCACCCCTAGCCTCACCTCTACATCCCCTGGAAGTACAAGGACTCATCTGTGGTCCCTGCTTCTCCTCCCTCCCTGAACACCTTGGCTCTGTTCCCAAGCAGCTGGACTTCCAGAGACATGGCTCAGATCCTGGATTTGCAGGGAGTTGGGGCCACTGAACTCCAAGATAAAGACACCATGAGGGGACTGAAGGTGGGCAAGGTGAGAGTTAAGGATCTTGGGGAGGTGGCCGGGTGCAGTGGCTCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826:ENST00000314672:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.718 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACATTCTGGAAGCCCCT
R:
GGGAACAGAGCCAAGGTGTTC
Band lengths:
342-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains