GgaINT1000140 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2695312-2696162:+
Coord C1 exon
chr27:2695312-2695510
Coord A exon
chr27:2695511-2695874
Coord C2 exon
chr27:2695875-2696162
Length
364 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GGTTCCTCCTTTCCTACCAGAGC
3' ss Score
8.19
Exon sequences
Seq C1 exon
GCTGGAGTCCAGGATGTCGTCAGACATTAATATAATCCTCCAGCTCCTGCAGCGCCAGCTGTCCCAAGTGCCGCCTGCATACAGCCCCATTTCACCATCCTCTCACAACCTGGCCATGTATGGCATCGTCCCACGGAGCCTGGAGCCTCTCACCCCCTGTGCACCCCTGGAGGATGAGCAGCAGACGGCCCCAGGGCAG
Seq A exon
GTAAGGGCAACCCTCGTGGCTTCCTTCTGCCCCCAGATGATGGGCCCTTGAGGGCCAGTGGTCCTCTCCAGCCTCCCTGTGTGCAAAGCACAGCTAAGTTCCTTTGGGTCCAGGCAAAGCCCAGGGAGCTTGAAGCAGGACATCTGCCTGGAGATGCTTCTGCCCAGTGCATCACTGATGGGCACTGGTTGCCCAGTCAGCAGGGAAGGGGATGGGTTCCTCTGAGGCTTTCCAAGCAATAATAATAATAATAATAATAATAACAACAACAACAACACTTGGGGGACTGATGGGGTGAGAAGGGTGCTTGACTGCTTTGTTTTGTTTTTGTCATAACCCACCTGGGTTCCTCCTTTCCTACCAG
Seq C2 exon
AGCCCAAGCTACGCGGAGGTAGAAAAGTTCCACTTGAAATCCAGGCACTCCTTGTCAAGTGGGATGCACCTCACCGTGGCATCCGATGAAACCATGACGGTCTACTCCGAGCAGGAGCACCACTCCCCACCTCTCCTGAACCCAGAGCCTCCCCACCAAAGGGCACCGAACACCCAGGGACTCTTGCGGGGCTCTCGTTTCCCCTCCCTCCCTGAGCACTTGGAGGCATCTTCCGAGCACCAGGACATTCAGAGACACCTCTCCGACCCAGTGCTTCCTGGAAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505:ENSGALT00000031464:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCATTTCACCATCCTC
R:
GGAAGATGCCTCCAAGTGCTC
Band lengths:
352-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]