BtaINT0079950 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93667747-93668679:-
Coord C1 exon
chr4:93668503-93668679
Coord A exon
chr4:93667833-93668502
Coord C2 exon
chr4:93667747-93667832
Length
670 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGAC
5' ss Score
1.74
3' ss Seq
TGCATTCCCTTTTCTCCCAGGAT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GCTGTGAGTATCTGGGGGAGTCCTACCTGAGTGGCCAGGAGTTCCCAGATCCCCGCGAGCCCTGCAACCTGTGTACCTGCCTCGGAGGCTTCGTGACCTGCGGCCGCCGGCCCTGTGAGCCCCTGGGCTGCAGCCACCCACTCACCCGAGCTGGGCACTGCTGCCCGACCTGCCAGG
Seq A exon
GTAGACCTGCCCTCCCATTGCCCCTGTCAGTGGGTCTGGTCACTGTCACCCTCCCCTGAGACAGCCTCACAGCAAGCCCACACCCTGGATTCTCCTCGGGTTCCTCACCCCATTCTCAGCCTCCTCTGGGTCTCTGCTGTCACCTCACGCTGACTGTCGTACTCACCAAATACGCAGAAGGTCTGTGTGGCCAGACCTTCACGTCCTTTGGCTGTCACCCTGCCTCCCTCAAACATGTCATGAGGCTAGAAGCCGTTCAGTGATTCCCACAGCCCTTGAGTCACCCAACACGCCCAGCACCTTCCTTCCCTCCTGGCTTCCTTCATCCACCCTCCCAAGCCCAGCCCACCTTTATTTCCAGGTGCCCCTCCCTCACATCCGCCTCCCACCCTGGCCTGTGCTCTGCAATCTTACTCTGTCCTCCCCCGCTTCACGCACACAAGTCTCTCCACCGTGGTCTGGCCGAAGTCTTTCCTCCCGTCCCTCCCCCTCCCAGCCATTCACCTCTCCCTTTCGGACTGTAGCTAAGCTTTGGTAGAGGACCCCAGGCCCGGCTGTGGTGTGTGGCCCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGGGTGGGTGGAAGGCTCCGCTGATTGCAGCCCCTTCCACTGCATTCCCTTTTCTCCCAG
Seq C2 exon
GATGCCTCTATCATGGCGTCACTGCTGCCCCTGGAGAGACCCTTCCTGACCCACTAGACCCCGCCTGCTCGCTCTGCACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=95.0)
A:
NA
C2:
PF0009313=VWC=PU(47.4=93.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGTATCTGGGGGAGT
R:
TGGCAGGTGCAGAGCGAG
Band lengths:
262-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]