MmuINT0085910 @ mm9
Intron Retention
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29442385-29443365:-
Coord C1 exon
chr6:29443189-29443365
Coord A exon
chr6:29442471-29443188
Coord C2 exon
chr6:29442385-29442470
Length
718 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
3' ss Seq
TCCATTCTCCATTTTGCCAGGAT
3' ss Score
6.6
Exon sequences
Seq C1 exon
GCTGTGATTATCTTGGGGTCTCCTATCTGAGCAGCCAGGAGTTCCCAGACCCCCGGGAAGCCTGCAACCTATGCACCTGCCTTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGG
Seq A exon
GTAGGAGGGCACCCCTCACCTCCTCACTCCTGCCGGGGCTCTAGGGTGGCTGGGCACCAGTGGGCAGGAAGTTTGTATACTACGGAACCCCATCTCAACCCTGAGATACTTACACACACGCGTGCGGGTGCGTGTGCGCTCGCGCATCCTCTTACCCCCTCAGAATTCTCATATGCCTGCTCTGCCCTCTTCTCTGTCTCCTCACTCATTGGTCTTTTGTGTTCTAAACTTTCTTTCTCTTAAACTGTCTTGCTGCCTTCTTAAAACTTCACCCCCCTGAAAACCGTCCAGTGGCTCCTATTACCCTTGAGTCACCAACCAGGAGAGGCAGCTTCTCCTGCCCAACCCTCTCTGACCCACCCCATCTGGCCACATAGCCAGCATGCCTGGGCCACCCTGTCCTCTCCCATGCAGGCAGGACATGCTCTGGACCTTTCACCCCCATTTCCCATCCACTGTCTTTCAGCCTCTTCCTCCATGCAGATCTGAATGATATCTTCCCTCCCATTCCTCCCTTCCCATCTTCCTCTGACATACTATCTCTAGCTGAACTGTGTGGGTTTTTTGGTGGGGGAGGGTCCTCAAAATGGCTCTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTTCATGCAAGTGACAGGGGAAGGCTCGCGTGACAGAGGCCCTCCCATTCCATTCTCCATTTTGCCAG
Seq C2 exon
GATGCCTGTACCATGGGATCACTGCTGCCCTTGGAGAGACCCTTCCTGACCCCCTTGACCCCACCTGCTCCCTCTGCACCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-Kcp:NM_001029985:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=95.0)
A:
NA
C2:
PF0009313=VWC=PU(47.4=93.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGATTATCTTGGGGTCTCC
R:
CTCACAGGTGCAGAGGGAGC
Band lengths:
263-981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: