BtaINT0079955 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93664519-93665031:-
Coord C1 exon
chr4:93664858-93665031
Coord A exon
chr4:93664602-93664857
Coord C2 exon
chr4:93664519-93664601
Length
256 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
AACCTTCACCCTCCAACAAGACT
3' ss Score
1.9
Exon sequences
Seq C1 exon
GCTGCCTGTTTCATGGGGAGGAGCACCCCGAAGGCAGTAGCTGGAAGCCCCCTGACAGCCCCTGCTCCTCCTGCATGTGTCATGAGGGTGTCATCACCTGTGCCCGCATCCAGTGTGTCACCTCCTGTGCCCAGCCCCACCAGGGGCCCAGTGACTGCTGCCCTCGGTGCTCTG
Seq A exon
GTATGCCCTCGATGCCTGGGGAGGGGTGAGGCGGGGGGTGGCAAGGAGGCAGAACCAGTCAGCATCTCCCTGCCATTGCCTGGGCTGGGTGGCCCCCGTTCTTACACACACTCCAATCTCTGAGGTTGGGGGGTCCAAGGGGCAAAGAACCCCCCCCATGGCATGGCGGCCAGTCTGAAAGTTCCCTGGTTCTGTTCTACTCTTACCCCACCCCACCCGTACCCCCCCAACCCCCCAACCTTCACCCTCCAACAAG
Seq C2 exon
ACTGTGAGCATGAGGGTCGGAAGTATGAGCCAGGAGAGAGCTTCCAGCCCGGTGCAGACCCCTGCGAAGTCTGCGTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.9)
A:
NA
C2:
PF0009313=VWC=PU(39.4=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTCATGGGGAGGAGCAC
R:
CTCACAGACGCAGACTTCGC
Band lengths:
252-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]