HsaINT0084786 @ hg19
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:17585]
Coordinates
chr7:128524835-128525324:-
Coord C1 exon
chr7:128525151-128525324
Coord A exon
chr7:128524918-128525150
Coord C2 exon
chr7:128524835-128524917
Length
233 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTG
5' ss Score
4.41
3' ss Seq
GCTCTCACTCCACCCCAAAGACT
3' ss Score
2.5
Exon sequences
Seq C1 exon
GCTGCCTGGCTCATGGGGAAGAGCACCCCGAAGGCAGTAGATGGGTGCCCCCCGACAGTGCCTGCTCCTCCTGTGTGTGTCACGAGGGCGTCGTCACCTGTGCACGCATCCAGTGCATCAGCTCTTGCGCCCAGCCCCGCCAAGGGCCCCATGACTGCTGTCCTCAATGCTCTG
Seq A exon
GTACTGGAAGCCTGGGGCGGGAGGGGAAAGGCGAGGAGGGAGCCCTGGGCCCACACCTCCCTGCCGCTGCTGGGCCGGGTGGCAGAGACAGGCAGTTGGAGAAGTGGCCTCCGTCCTTGTGCACACTCCACTCCCTGGGATCAGGGGGAGGCTGGAGATAGAGGACTCCACCCCTGCCTCGCTGCCAGCCTGAAGGACCCCTGGTCCCGTTCTGCTCTCACTCCACCCCAAAG
Seq C2 exon
ACTGTGAGCATGAGGGCCGGAAGTACGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCCTGTGAAGTGTGCATCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-KCP:NM_001135914:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCATGGGGAAGAGCA
R:
CTCGCAGATGCACACTTCACA
Band lengths:
252-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)