BtaINT0079967 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93678563-93678889:-
Coord C1 exon
chr4:93678793-93678889
Coord A exon
chr4:93678646-93678792
Coord C2 exon
chr4:93678563-93678645
Length
147 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TTTCTGGCAATCTTCCCCAGGCT
3' ss Score
6.74
Exon sequences
Seq C1 exon
GCAGGGACAGTGCGGTGCCAGGGGCCCTCATGCTCAGAGCTCAACTGCCTGGAGAGCTACACCCCACCTGGGGAGTGCTGCCCCGTCTGCCGGCCAG
Seq A exon
GTGACCTGCCCTTGTCTTGCCTACCCCCTCACCCTGGCCTCAGCCCCAGAGGGTTCCATACCTACCTGGGGTCATGCCTTCCCCTGGGTGATGACCAGCCACCTTGCTCTCTACTGACTAGCTTGTCTTTCTGGCAATCTTCCCCAG
Seq C2 exon
GCTGTGAGTATGAGGGGCAGCTTTACGAGGAAGGGGCCAACTTCTGGTCCAGCTCCAACCCTTGTCTCCAGTGCTCCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.7=87.9)
A:
NA
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCCCTCATGCTCAG
R:
GAGCACTGGAGACAAGGGTTG
Band lengths:
154-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]