MmuINT0085928 @ mm9
Intron Retention
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29452585-29452874:-
Coord C1 exon
chr6:29452778-29452874
Coord A exon
chr6:29452668-29452777
Coord C2 exon
chr6:29452585-29452667
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
ACCCCGTGTCATCCTTCCAGGCT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAACTGTCTGGAGAGCTTCATCCCTCCTGGAGAATGTTGCCCCATCTGCCGGCCAG
Seq A exon
GTGACCTCATCCCCTCAGTCTCCGTGGGGCCACACCTATTTGAGTCAATGCATTCCCCTGGGTTATGCCCACCCATCATGCTCTCTGGTGACCCCGTGTCATCCTTCCAG
Seq C2 exon
GCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGTCCAGTTCCAACCCATGCCTCCAGTGCTCTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-Kcp:NM_001029985:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.7=87.9)
A:
NA
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAACCGTGCAGTGCC
R:
CAGGCAAGAGCACTGGAGG
Band lengths:
179-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: