HsaINT0084815 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128902777-128904380:-
Coord C1 exon
chr7:128904290-128904380
Coord A exon
chr7:128902860-128904289
Coord C2 exon
chr7:128902777-128902859
Length
1430 bp
Sequences
Splice sites
5' ss Seq
GCCGGCCCG
5' ss Score
-24.72
3' ss Seq
TCTCAACCCCTCAACCCTAGGCT
3' ss Score
6.71
Exon sequences
Seq C1 exon
ACAGGAGCCGTGCAGTGCCAGGGGCCCTCGTGTTCAGAGCTCAACTGCTTGGAGAGCTGCACCCCACCTGGGGAGTGCTGCCCCATCTGCC
Seq A exon
GGCCCGGTGACCTCCTGCCCTGTCCTGCCCTGCCCCGCCATCCCTTCAACCCCAAGGGTCCAGTACCTACTTGGGGTCATGCCTTACCTCAAGTGATGTCCACCCACCCTGCTGCCTGGTGACCCACTTGTCATCCTGCCAACCTTCCCAGGCTGTGATTATGAGGGGCAGCTTTATGAGGAGGGGGTCACCTTCCTGTCCAGCTCCAACCCTTGTCTACAGTGCACCTGCCTGGTGAGTCCACCTGTCCCCTCTGCCCAGGCCCTGCACCTCCCTGGACACCTGCCCTGCCCTGGGCCCTGCCTGCCACTCCTCCAGCCCCCTCACATGCCTCCCGAGAGGTGGAGCCAGCTAGGTTCTCCCTCCATCCCTGCCCTGTGCCCCCCTCCTCCGAGGGTGCCCAACACCCGCCCACCCAGCCCTCTGCGGGAGCCAGACCTGAAGCCTCACAGCCACTGGTGCATTACAGAGGAGCCGAGTTCGCTGCATGGCCCTGAAGTGCCCGCCTAGCCCCTGCCCAGAGCCAGTGCTGAGGCCTGGGCACTGCTGCCCAACCTGCCAAGGTGAGAGCCCCTGGCCCCTCCCTGGTAGAGCCACAGGTAGGTTGTCGTGCCATTTCTTGAATTCCAGAGCCCACCTTGCCGGCCTCCAGTGGGTTTGGTCCGTGGCGGAGCTGGAATGCCTGAGCTCAAATTCTGCCATTGCCACCTAGTGCTTGTGTGACTCTCTTCCTCAATTTCCCCATGTGTAAGGTGCAGATAATGATATTCCATGCCTCATAGTGCAGCTTAATAAATGTTTGCTTTCTACTTTGTGCTCCCCAATCATGAGACATGGGGTCAGCCCTCAGGGATGACCCCTAGAGTGTGACACTGAGTCATACACTAATGCAAAATCTTGTAACAGCCAAGGGCAGGAATAGAAGCAGGCACCAGCTAGTGTGCGAATTCAGAGGAAGGAGACCGAATCCAGCCTGGGCACAGGAGGGAAAGCGTCCTGGAGGCAGCTGGTCCCCAGGTGGCCCTTAAGGATAAAGAAAAGTTAGCTTGGTGAAGGGCTGAGGAAGGCAGTGAGCCTTCTAGGAAGAGGGGAGAAATCAAGCACAGGCGTGGCCCTGACACGGAGGGTGAGTGTGCAATGTTGGCTGGGAAGGTGTGAGAGGTGACGAGGGGCCAGAGATAGGTGGGGCACATGGGTGTGGCTATGCTCTGTCCACGGAAGACCAGAAAGGGCGGGCTAAGGAACTGAGGCCTCACCCTGCCTGGGGCACTGGGAGCCACTGGGGAATCTAGGCAGAGATCTGACCCCATCTAGTCTTGGCTCGGGAGAGAGCCCTCAGAGGGCATGTGGACAAGGAAGGCGGGCAGGCTGAGGCTGGGGTCCAGGCCAGCTCCCACCAGGCCTCCCTCTTCTCAACCCCTCAACCCTAG
Seq C2 exon
GCTGCACAGAAGGTGGCTCTCACTGGGAACATGGCCAAGAGTGGACAACACCTGGGGACCCCTGCCGAATCTGCCGGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.7=93.5)
A:
NA
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development