BtaINT0079969 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93677333-93678357:-
Coord C1 exon
chr4:93678264-93678357
Coord A exon
chr4:93677422-93678263
Coord C2 exon
chr4:93677333-93677421
Length
842 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTCTGCCTGTCTCCCCCAGCTC
3' ss Score
10.12
Exon sequences
Seq C1 exon
AGGAGCCTGGTTCGCTGCGTGCCCACGAAGTGCCCGCCCATCCCCTGCCCCAAGCCAGTCCTGAGGCCTGGGCACTGCTGCCCGACCTGCCAAG
Seq A exon
GTGAGAGCCCCTGCCCCTTCCCTGGTGGAGCTCCAGGTGGGGCTGTTAGGCTGTTTCATCAACCCAGAGCTCACTCTACAGACCCCTGACCTGGGGGTTTCGTCAGCGGGGGAGCCGCGCCTGACCACACCTGCTCCAAGTTCTACCCTTGTCACTTAGCGCTTGTGTGCCTCTGAGAGAGTTACTCCGTGCCTCAGTTCCCCATCTGTAAGAGGGGGATAATGATACTGTATATACCTCGATAAACATTGACAATTACCTGCTTTGTGCAAAGACACCCGTGGACCCTCGAGGCAGACCACTAGAGGGCGACACTGAGTCACAAACTAGGACTGGCAAAGGCGGGATTAAATTACACGCAGATACTATAGAAACTCAGAGGAAGGAGACCTAGTGGAGACCTCGTCCAACCTGGGCACGGAAGGGAGGGCGTCCTGGGGGTGGTGGGTCCGGACTGAACCTCAAGGCTAGACAGCAGTTCGCTAGGTGAAGGGCAGAGGGCATGCCAGGAAGAGAGGGCCGTTTGGGACTGACACTCCATGTGAGGTGGGTGTGTGTTGGTTGGGAAGGCGCAGGCTGGTGGGCGTGGCTTACACTGAGAGGTGGGGGGCAGGGCAGAGACAGGTGGGCGTGGCCATGCTGGCCCTCGAAGACCTAGAAAATCAGGCTGAGGAGCTTGGGCTTGACCCTGCCTGGGGTGCTGGGAAGCTGGGACAAGGGGTCCAGGCAGAGGCAGGATCTGGTGGGGTTTAGGGTCTGAGGAGGACCCTCAGAGGGCATGTGGAGGAGGGAGGGTCTGGCTGAAATTTCCACCAGGCTTCTTCTCTGCCTGTCTCCCCCAG
Seq C2 exon
CTCAAGGCTGCACAGAAAATGGTTCTCACTGGGAGCATGGCCAAGAGTGGACCACCCCTGGGGACCCCTGCCGGATCTGCCAGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
NA
C2:
PF0009313=VWC=PU(45.6=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]