BtaINT0080137 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45820392-45821333:+
Coord C1 exon
chr29:45820392-45820550
Coord A exon
chr29:45820551-45821117
Coord C2 exon
chr29:45821118-45821333
Length
567 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGC
5' ss Score
7.73
3' ss Seq
TCCTTCTCTTGCCTGTGCAGGCC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GACTGAAAGACCTCCTCCTAGCAGGCTGCTCCTGGTCTGCAGTCTCTGCCCTCAGCACCTCCAGCTGCCCCCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATCAAGGACCCTCAAATTCGGGACTTGCTGACTCCACCGGCGGATAAACCGG
Seq A exon
GTATGCTCTAGGCCTGACTTCCCTGTGCTCCTTTCAGCATTCCCAGAAGCTCAGGTAGTCCCAGAAATGACACTGTTGAAAAGTAGAAAAGTGGAAGTTGAAAACAGGACGATGGACTATGTACAAGTACAGTTAACTATTTACAGATAGCTACCTGCAAAGAAAGGAGTAAGTCTGTTTTGTGGGTCAGTGGAGTTTGGGGGTTAGAGAGTATAAGCCTGAGGAAGTCTGGGAAGGCATCATGGTTGAGGTGGAACGTTGAAGCCTGTTTCCCTGATGGTCTAGAAAAGTGTGGGAGTGTGGGAAGGAGAGGAGCATTCCACACATACCCCTTTGCTGTGTGAGTGAGGCACAATCCAGCAGCTGGGAAGAAAGAAAACGTGTTTGGTTTCCTGGAAACGGCCCCCACACACTGCTCGCTCCCTGAAGGCAGGGCTGGGTGTGGGCAGTTCTGCTTGTTAACCCCTGCACAGCCCAGCCAGCAAATATCCATGACTGAAGCTGCCTGCAGCTTGAGCTGAACTAGAGTTAAGGGTCTGGATCTAGGTCCTTCTCTTGCCTGTGCAG
Seq C2 exon
GCCAGGACAATCGCAGCAAGCTCCGGAACATGACCGACTTCCGGCTGGCAGGCCTTGACATCACAGACGCCACGCTTCGTCTCATCATTCGCCACATGCCCCTCCTGTCTCGACTCGACCTCAGTCACTGCAGCCACCTGACAGACCAGTCCTCCAATCTGCTCACTGCTGTTGGGTCTTCCACTCGTTACTCCCTCACAGAGCTCAACATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032:ENSBTAT00000061554:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACCTCCTCCTAGCAGGC
R:
TGTGAGGGAGTAACGAGTGGA
Band lengths:
354-921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]