GgaINT0002806 @ galGal3
Intron Retention
Gene
ENSGALG00000013286 | KDM2A
Description
NA
Coordinates
chrUn_random:27615373-27615798:-
Coord C1 exon
chrUn_random:27615640-27615798
Coord A exon
chrUn_random:27615523-27615639
Coord C2 exon
chrUn_random:27615373-27615522
Length
117 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
CTTCTCCCCTTCCTCTGCAGGTC
3' ss Score
13.61
Exon sequences
Seq C1 exon
GCCTGAAAGACCTCATCTTAGCAGGCTGTTCCTGGTCTGCAGTCTGCGCTCTCAGTACCTCCAGCTGCCCCCTTCTCAGGACCCTTGATCTCCGGGGGGCAGTAGGAATCAAGGACCCTCAGATTCGGGACTTGCTCACACCTCCGACAAATAAACCCA
Seq A exon
GTAAGCTGCTGCCATGGGGCCTAGATGACTGAGCCAGGCACAGGGCAGGAGGTGTCACCAGCTCTGGACCCCCACGCCACCACATGTCTGACCTCACCTTCTCCCCTTCCTCTGCAG
Seq C2 exon
GTCAGGACAATCGCAGTAAACTCCGTAACATGATTGATTTCCGGCTTGCGGGCCTGGACATCACCGATGCCACGCTGCGGCTGATCATCCGCCACATGCCCCTGCTCTCCCGCCTCGACCTTAGCCACTGCAACCACCTTACAAACCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286:ENSGALT00000021696:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGCGCTCTCAGTACCTC
R:
GTTGCAGTGGCTAAGGTCGAG
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]