BtaINT0081014 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012809 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr8:59674231-59674809:+
Coord C1 exon
chr8:59674231-59674309
Coord A exon
chr8:59674310-59674603
Coord C2 exon
chr8:59674604-59674809
Length
294 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CATGCAGTGCCTCCCCACAGACT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GACAATCTCAACTTGCTGCTAACTGAGGAGGAAATGTACAGCCTCACAGAGACCTTTCAGCAGTGTAAAGTTATCCCTG
Seq A exon
GTAAGGCTGGGTGGTACTGCCAATGGAGAAGGCCAGGAAGGTTTCTCCTTCATACTTTCTAGGATGAACCATGCAAGGAATAATCTGGAATTTGGAGGGCAAGGGTGTAAATGGAACCCTGTTTGCAAGCTGTTGACCCACCCCTGGTCACAGCCTGTGTTATCCTGGCTATGGAGACAAAGACTGGACAAAAGCTGTGGGCATAGGGGCTCTGGAGGGTGCACTCAAGGTGAGTCAAGGTGCTCCAGATGCTGAGAAGGGTGGGCATGGCTAGCATGCAGTGCCTCCCCACAG
Seq C2 exon
ACTGCTCCCTGACGCTGGAGGACTTCCTACGCTACCGCCACCAAACAGCAAAGAGAGGGAACAGTGACAGAGCTCTCAGTGAGGAACAAGAGGAGCAGGCAGCCCGCCAGTTTGCAGCCCTGGACCCTGAACACCGAGGACATGTCGAGTGGCCTGATTTTTTGTCCCACGAGTCCCTCCTGCTTCTACAGCAGTTGCGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012809:ENSBTAT00000017015:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(3.3=7.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCTCAACTTGCTGCTAACTGA
R:
CTGGGGACGCAACTGCTGTA
Band lengths:
284-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]