HsaINT0086389 @ hg38
Intron Retention
Gene
ENSG00000122733 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr9:34976152-34976740:+
Coord C1 exon
chr9:34976152-34976230
Coord A exon
chr9:34976231-34976534
Coord C2 exon
chr9:34976535-34976740
Length
304 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GCACGGGGTGCCTCCCACAGATT
3' ss Score
6.96
Exon sequences
Seq C1 exon
GACAACATCAACTTGCTGCTTACTGAGGAGGAAATGTATAGCCTCACGGAGACCTTTCAGCGGTGTAAAGTCATCCCTG
Seq A exon
GTAAGGTTGGGTGGTGCTGCATGGATGGAGAGGGGCCGGGCAGATTTCTCCTTCAGGCTTTCTAGAATGAACCATGAAAGGAGTGTTCCATATTTAGTGGGTAGAGGGTAAATGAGTCCTTGTTCCTGAGTTGTTGGCCAGCAGAGTCACCTATCCCTGTCACAGCCTGGGTGACCCTGGCCATGGGAGGCAGAGACTTAGCAAGAGCTGTGGGTTTGGGGGCCCCGAGGGTGCCCTGGAGGTGATGGAGGTGCCCTGAGGCTGAGGAAGGATGGGCATGGCTAGCACGGGGTGCCTCCCACAG
Seq C2 exon
ATTGCTCCCTGACACTGGAGGACTTTCTGCGTTACCGCCACCAAGCAGCCAAGCGGGGGGACCGTGACAGGGCCCTGAGTGAGGAGCAAGAAGAGCAGGCGGCCCGCCAGTTTGCTGCCCTGGACCCTGAACATCGAGGCCACATAGAGTGGCCTGACTTCTTGTCCCATGAGTCCCTCCTGCTTCTGCAGCAGTTGCGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733:ENST00000242315:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTGCTGCTTACTGAGGA
R:
CTGGGGACGCAACTGCTG
Band lengths:
278-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development