BtaINT0081123 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33683447-33688104:+
Coord C1 exon
chr4:33683447-33683533
Coord A exon
chr4:33683534-33687998
Coord C2 exon
chr4:33687999-33688104
Length
4465 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GTCTTGTGTTTTCTTTACAGGTA
3' ss Score
12.72
Exon sequences
Seq C1 exon
ATTCAGAATGATCAGTGCCAGGAGATGGACACCACCGCTGACAAGTGGGTAAAACTCACAGACAATGGAGAATGGGGCTCTCATTCT
Seq A exon
GTAAGTCTCTCTCTGCTCTTCTCTCATACCAACCCCATTCTTCTCCTTTATTTTCTCAAACTTATTTTTAAAAGTTTATTTTAAAGAAAAAAATTATCTTTTAATTTAGAAATTTCTAGTTAGGGAAGAAATTGCCCCTAAGTTTCATGGACTCAGGCTCTTTCTAGTATTATTTTCTTTCCTTTTCTTTTCTCCTTAGCTCCCTCTCCCTGCTCTTTCCTATCACACTTCAACTGTCCTGCTTTTCAAGGGAGGCATTAACAGGAATGAAGTCTACTCAGAATTAATATACAGAACCTCTGGGTATGTAAGTTTACAGATGTGGTAATCATATGAAAGATATTAATCAGTGACTCTTGGCATTGGATGGATCCTTGAGTTCGAAGCATCACTACGAACAAAGCTAACCATAGATGTGATGGAATTCCAGTTGAGCTGTTTCAAATCCTAAAAGATGATGCTGTGGAAGTGCTGCACCCAATATGCCAGCAAATTTGGAAAACTCAGTAGTGGCCACAGGAGTGGAAAAGGTCACTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATCTCACACACTAGCGAAGTAATGCTCAAAATTCTCCAAGTCAGGCTTCAACAGTACATGAACCATAAACTTCCAAATATTCAAGCTGGATTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCTAACATCCATTGGATCATAGAAAAAGGAAACAAGTTCCAGAAAAATGTCTACTTCTGCTTTATTGATTATGCCAAATCCTTTGACTATGTGGATCACAACAAACTGTGGAAAATTGTTCAAGAGATGGGAATATCAGACCACCTGACCTGCCTCTTGAGAAATCTGAATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGGAAAGGAATATGTCAAGGCTGTATATTGTCACCCTACTCATTTTACTTATATGCAGAGTACACCATGAGAAACGCTGGGCTGGATGAAGCTGAAGCTGGAATCAAGATTGCTGGGAGAAATACCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGCAAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAGCATTCAGAAAACAAAGATCATGGCATCTGATCCCATCATTTCATGACAAATAGATAGGAAAACAATGGAAATAGTGACAAACTTTACTTTCTTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGAAAAGCTATGACCAACCTAGACTGCATATTAAAAAACAGAGACATTACTTTGCCGACAAAGGTCCATCTAGTCAAAGCTATGGCTTTTCCAGTAATAATGTATGGATGTGAGAGCTGGACTATAAAGAAAGTTGAGCACTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAATCCCTTGGACTGCAAGGACATCCAACCAGTCTATCCTAAGGGAAATCAGTCCTGAATATTCATTGGAAGGACTGGTGCTGAAGCTGAAACCCCAGTACTTTGGCCACCTGATGTGAAGAACTGACTCAATGGAAAAGATCCTGATGCTGGGAAAGGTTGAAGGCAGGAGGAGAAGGGGATGAAGAGAACGAGATGGTTGGATGGCATCACCGACTCGATGGACATTAGTTTGAGCAAGCTCCAGAGTTGGTGATGGACACGGAAGCCTGGCGTGCTCCAGTCCATGGGGTTGCAAAGAGCCAGACATGACTGAGCAATGGAACTGAACTGAGTTTCTTTTATCCAGCTTTCTCTGCAGTTACCCCAAGAAGCGATTTTCAAAGTTGTCTTCTTGGGGACTGTTCTGAGCCCAGTTTTGCACAGATCTGCATATCACAAAATTCATCCATGTCTGGAGCTGAAACCTGCTTTCTATCTGTTACCCATTGTTCAAAATTCTACCCTTTCTGGTTGTGTCTGGTAAACTGCTTATTTCTTTAAGGACAACCCTGAGTGTTTGAAGGCAATTATTAGGTAACACAGTCCCTAAATCTGTTATTATTTGAGGCACTGTCCCTTTGGAGTGAGACATGGATTTAAAATCTAGAAAAATGGTATAGATGAACCTTTTTACAAGGAAGAAATAGAGACACAGATATAGTGAACAAATGTTTGGACACTAAGCGGGGAAGGGAGTGGGGTGAATTGGAAGATTGGGATTGACATATATACACTACTAGGTATAAAATAGATGACTAATGAGAACCTGCTGTATAGCACGGGGAACTCTACCAAATGCTCTGTGGTGACTTAAATGGGAAGGAAATCCAAAAAAGAGGGCATATGTGTGCACATATAGCTGATTCACTTATTGTACAGCAGAAACGAACACAACATGGTAAAGTACTATACCCTAATTTGATCCCTGAGTCGGGAAGGTCCCCTGGAGAAGGAAATGGCAAAGCACTCCAGGGTTCTTGCCTGGGATATCTCATGGACAGAGGAGCCTGGCAGCCTATAGTCCATGGAGTTGCAAAAATCAGAAATAGCAACTAAACAACAGCAGCAGCTCTGGTTTATAGTCGTTGTGTTTCTTTAGGCAATTGACTTTGTCTCTTTGACTCTAATAGTTCATATGAGAAATAGGACCAATCTTGCAGAGTTAAATGAGAGGATACATTTTATTCAGTGGCTCAGTCACGTCTGACTCTTTGTGACCCCATGGACTGCAGCATGCCAGGCTGCCCTGTCCTTTACCATCTCCTGGGGTTTGCTCAAACTCATGTCCATTGAGAGGATACATAGGGAGGGCCTAACATGGTGCCTGCCGTGTAGATTGAACACTGTTTCAATAAGTGACCATCCATCCTTGCCTTTGTGTTGTAGCAGATACCTCATCCTTGAGTGATTAATATAATGCATCCTTTCAGAGTAATTTTTTTGATCTGTATGCCTGGAAGTGATATTAGTACCAATTAAAATCCATTCACCTAAGCTTTCAGTCCTCTGGGCTTTGACGGTACAAGTAACCCTTGGCAGCAAATATGCTTTCTTCACTTATAGAGACTTAACACAAAGGAAGAGTATTTAACGTACAGCTTTTCTGACTCTCTGGCAGGGTGAGGTAGTCAGATATGTTTTAATTTTATATTGCTTGAATTCGCCCAGCCAGACTCCATAGAAGAATAAGGGTGGCAAATGAGAAAGCAAAACACCCTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCGTGAACCGCAGCATGACAGGCCTGCCTGTCCATCACTAACTCCCGGAGTCCACCCAGACTCATGTCCATTGAGTTGGTGATGCCATCCAACCATCTCATCCTCTATAATCCCTTTCTTCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTCGCATCAGGTGGCCAAAGTATTAGACTTTCAGCTTCAAAATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTGGCAGTCCAAGGGACTCTCAAGAGTCTTTTCTAACACCACAATTCAAAAGCATCAATTCTTTGGCAATCAGCTTTCTTTATAGTCCACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGACAAAGTAATGTGTCTGCTTTTTAATATGCTGGCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCATCTTTTAATTTCATTAGTTTACTTGACTGAATCAGCATGAAATTGATCGGAAAAGTAATTTGATAAAAATGTTCTGGTGGCAAAGGAAGCAAATATTAGACATTGTATCATTTACATTCTGGAGCCATAGAGTCAAATCAGGCTATTCTATAAGAACAGTCCTATTTTTCTTTTGTTGCTGTTGCAGTGTTGTTTGTTAAGTAATTTTAAAAGGAAGCAAACTCATTCTATTACCTTTTTGTTTTCAGAGCCCAGAGATTTACTTATGAATAGTGACAGCAATCAGTATGTAATTGGGCTAAGTGCCTCTCACAATCTAAATTGAGTCTTTTAAATATAAACCAAGTCTTCATGCACATGATTTGAAATTCATTTTATCTTCTTCCACGCTTGAAGAATTTTCTGTTCCTCCCTCTTTACTGTATTTTTGGGGTTGGCAAACTTTTTCTTTTTTTTACAAAATGTGAATTTAAGGAAAGCTTAAGTCTCAGTAAGTAGTTGATTTAAATTTGTGGGTTCCAGATAATCGTGTTTCATTTTAATGTGTTGAAAAGTGTATAGGGGATTAACTTTGATATAGGTATGGTTGGAAGTAGCATGGTTTATCTGACCTGAGTGTCTTGTGTTTTCTTTACAG
Seq C2 exon
GTAATGTTGAAATCAGGCACAAACATACTGTACTGGAGAACTACAGGCATCCTTATGGGTTCCAAGGCAGTCAAGCCAGTGTTGGTAAAAAATATCACAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023:ENSBTAT00000005255:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]