GgaINT0113138 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8089038-8090987:+
Coord C1 exon
chr1:8089038-8089124
Coord A exon
chr1:8089125-8090881
Coord C2 exon
chr1:8090882-8090987
Length
1757 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TGTCATGCATATTGTTGCAGGTA
3' ss Score
8.06
Exon sequences
Seq C1 exon
ATACAGAATGACCAGTGCAAAGAGATGGAGTCCACAGCAGACAAATGGGTGAAGCTGACAGACAATGGGGAATGGGGCTCTCATTCT
Seq A exon
GTAAGTAAAAATTTGTTCAAAAATATATATATTTTTGCATTTATCAATGACTGTAATTTCCTCTGAACAAGCAAGGATCAGATCCTGTGAATACATATGAAGAAGCACAATTTGCCTGCTACTGTGGGCAAAGCCACTGTGATCTGTAAGGGGCTGATCCCAAAGCAAATGATAGACATGCAAGAATTTCTATTGATTTCCCTTAATCAAGTGCTGTGTTTATGAGGCTAAACAGATTTACGCAAATCCACATGCCACGGTCACTTGACATGATGGTAATTGAAATCTTCTACAGCATTTGTTTGCTCATGAGACCCTGCCATGCAGCCATGGGCACAGTGTGTGATATGCATGCAGGCAGGGCTGGCATTTTGTTCCCAAGTGCATGCAGCCAGCTTGTGCTTTCCAACTTACCCTGCTAAAAAGCAAGCTGGCAGCACTGAGGTGGCTCCTGTAGCAAACATGAGTGCCCACGTTGGGAACAGCAGCCTTTTCCTTGGCCTGTGTCCTGACGAGCTTAGCTTGCTTGGTGCACAGACCATGTGCAGACTCATTAGCTCATCCTAATGCCTGATTTTCACTAGACCCTCTTACCCCAATTCCCAGAGCCATGACAGCAAAGACCCAGTGTAGATGACATGGTGCCAGAAAAAGAAGGTTTTTTATTGGCATGGAGAACACCCCACTCTATTTTCTGTTGTCTGCTTATCTTCCTGGAGGATAAACTGTGTTCCTGAGCCAGCTCTGCTTGGCAACGCCTGGTACCTCAGGTGCAAGCCTCATCTGTGAGTCACGTTTGGAGCTGGGAGAGCTGGGTCAGAAGGGATGAGTGCACAGACTGAGGAGTGGATCCAGGGCCAGGCCATTGGCTTGAGTGAACCAGAAGATGTAAACTGCATCTGAATGGGAGATGGTGCCATCTGAGCTTGTGGTCTGGAATGTGCACGTGCCTCCACTATGAGGGTGGCTTGAATGCCTGGCTGAAAGGTAGACATGAGCCAGGTGACATGGCTGTTCTAGCTCCCCTTGAGGCTTTTTTATGTGCTGCAAATCCTGCCAGCTTCTCTGGTCCCAGTATTCCATTCACTGCAGCCTCTGCTTTCAGCATGCCTGGTCTGTTGCATCTCAACATCTCTACACCACACAACATGATGTTTGGTTCATGTGGTCCAGCTTCAGCTGTTACGTGTGGTAACCCAATTCTCCCCTGGATTGAGGTTGCCCGAGGAGTGGGGGATACAATGTTCTGTGTCTAGCTTTGCTGAGTTTTTGGACTTTTTATCCTGAGTGAAAAAAACTGTGGTCCTGCCAGAACTGCATTGCATTGCTGTAAATCTCATTATGCTGGATGCTTATGCTGGTAGAGTTTATCACTTTTCTTGGGTGAGGGTTGTCATACAAAGATACAGCACCTGCAGGCCAACACTGTTGCACTGACAGAAAGCAACCTGTAGTGTAGAGGTAGGTATGGTACAACTTTTCCCAGTTCTATTTACAACACAGTCAGAAGCAGCTCTTGGTGTTTTTCCATAAAACTGGAGCGTTGAGCAGCTTTTTTATTACACCCACTTTAGCACTTTTCAAAGATGTTTCCACAGCATCTGCCTAATTGTCTCTTCATTCCTTCTTGTCTCACTAAGCAACTTAGGAAAAGCTTGAGTTGCTGCTTGGATGCACAAGAACGGAGCAACAGAAGAGAGAAATAAGATGTTTCTTGGTGAGGGGATGCAAACTAACTGTCATGCATATTGTTGCAG
Seq C2 exon
GTAACCTTGAAATCAGGTAGTAATATACTATACTGGAGAACAACAGGGATTCTTATGGGGTCCAAAGTGGTAAAACCAGTTCTGGTGAAAAACATCACAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAATGACCAGTGCAAAGAGA
R:
TTCAATTGTGATGTTTTTCACCAGA
Band lengths:
190-1947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]