BtaINT0081411 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106365278-106365848:-
Coord C1 exon
chr11:106365688-106365848
Coord A exon
chr11:106365447-106365687
Coord C2 exon
chr11:106365278-106365446
Length
241 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCCACCCTCATCCTCAACAGCTT
3' ss Score
7.66
Exon sequences
Seq C1 exon
GACATTGCTGGACGGTTCCTGGCTCAGAAGGGCACGGAGGAGGACCTGGAGCTGCAGATGGAGGACTGTGAGGAGAGGCGGGCGCAGCTGGAAGCCTTGATGAAGAAGCTGGAGATAGAGGAGGCCACGCTCAAGTTCCGCCAGACGCCCAGCTCCGTCAG
Seq A exon
GTACGTGGGGGGTCCCGCCTCTCTCTGCACTGACGCCCAGCTCCGTCAGGTACATGGGGGGTCCCGCCTCTCTCTGCACTGACTGCCAGGCTTGGAGCTGAGCAGACCCGCTGCCTCAGGGCCTGGCAAGGGCACTCCCCGCGCCCATGTCTTAGTTCTTGAGCCGGAATTAGCACAACACTCGCTCAGGACCCCGCTGCCATGCCCTCGGTCCGCCACCTCCCACCCTCATCCTCAACAG
Seq C2 exon
CTTTAAGTCTGTTGAGAAGAAAATGAACGATATGCTGAAGGAGGAGGAAGAGCGGCTGCAGCTGGCTCACAGCAAGATGACCAAGAGTCAGAAGCTGCTGCTGACCATCCAGACCGGCATCGACAACCTCTACATCCGCCTGATTGGCATTCCCCTACCCACAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTGCTGGACGGTTCCTG
R:
TCAGGCGGATGTAGAGGTTGT
Band lengths:
304-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development