MmuINT0003717 @ mm9
Intron Retention
Gene
ENSMUSG00000026940 | 4921530D09Rik
Description
RIKEN cDNA 4921530D09 gene [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25465145-25466150:-
Coord C1 exon
chr2:25465990-25466150
Coord A exon
chr2:25465314-25465989
Coord C2 exon
chr2:25465145-25465313
Length
676 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TGTGCTTACCTCCCCCATAGCTT
3' ss Score
9.5
Exon sequences
Seq C1 exon
GACATAGCTGGCCGCTTCCTAGCTCAGAAAAATACAGAGGAGAACCTGGAGCTACAGATGGAGGATTGCGAGGAGAGGCGGACACAGTTAGAGGCCCTGATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGG
Seq A exon
GTATGTTCCCCGGCTCCTGGATGGCTCCACAGGTACAAGCTAGTAGCTGCACATATCCACTGCCAGTGAATTTGTTCATCTGCAGAAGAGTTGAGGACCTGCCCGCTTGACGCTTAATTATGAGTCCCTGAAGTTGCCACCTGGTTCTGGACCCCTGTGGGCCTACCCTCACTGCTGTGCCCACCTCCCCCTCACTGCTGTGCCCACCTCCCCCTCACTGCTGTGCCCACCTCCCCCTCACTGCTATGCCCACCTCCCCCTCACTGGTGTGCCCTCCCCCCCTCACTGCTGTGCCCACCTCCCCCTCACTGCTGTGCCCTCCTCCCCCTCAGTGCTGTGCCCTCCTCCTCACTGCTGTGCCCTCCTCCTCCTCACTGCTGTGCCCACCCTCCCCCTCACTGCTGTGCCCACCTCCCCCTCACTGCTGTGCCCACCTCCCCCTCACTGCTGTGCCCACCTCCTCCTCCTCACTGCTGTGCCCACCTCCTCCTCCTCCTCACTGCTGTGCCCACCTCCCCCTCACTGCTGTGCCCACCTCCTCCTCCTCACTGCTGTGCCCACCTCCTCCTCCTCCTCACTGCTGTGCCCTCCTTCTCCTCCTCACTGCTGTGCCCTCCTTCTCCTCCTCACTGCTGTGCCCTCCTCCTCCTCACTGCTGTGCTTACCTCCCCCATAG
Seq C2 exon
CTTTAACTCTATCCAGAAGAAGATGAAGAACATGCTAGAAGAGGAAGAAGCAAGACTCAAGCAGGCCCAAAACAACATGAATAAGGGCCAGCAGCTGCTGCTGGTCATCCAGACAGGTATTGACAACCTCTACATCCGGCTCATCGGCATCACCTTGCCAACCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-4921530D09Rik:NM_029859:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTTCCTAGCTCAGAAAA
R:
TGGAAGGTTGGCAAGGTGATG
Band lengths:
319-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: