BtaINT0081414 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106364117-106365013:-
Coord C1 exon
chr11:106364917-106365013
Coord A exon
chr11:106364319-106364916
Coord C2 exon
chr11:106364117-106364318
Length
598 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAG
5' ss Score
4.67
3' ss Seq
CTCCCCCTCCTTCCTTGCAGAGA
3' ss Score
12.1
Exon sequences
Seq C1 exon
GTCAGCACCAAGGTGAGGGATGTGTTGGAGTCCTCCACCCTGAGGGAGAAGCAGAACACCAGGATCAGCTTTGAGGAGACGGAGGAGGATGTCATAG
Seq A exon
GTACAGGAGGCCCAGCAGCTGGAGGGGAGGCGGGGGCAGGCGGCCGGCCTGAGCTGTGCAGAGGCAGGGGCTAGGGGTGGCGCTTGCTGCATCTGACCAGGGTGGCCTGGAGGGACAGTGGGGGCTAAAGCAATGGGAGGCCGCGTCAGCTGTACCCACGGGACTTTAACTGATGGAGGCGATGGGAAGGCACCAGCGCCAGTAGGCAGGCAGGGGGTGCCTAGGCCAGGGCCCCTATGGGGGTCTGTGTGGGAAGTGCAGGGCGCACAGCTTAAGACCCTCCCATTCTAATAATTCTGGCGCGTGTGGGGCCTCGGGGCTGTCCCCCTCTTGTCTGGCACCTGTCCCTGAGGGATTCAGGCTTGGCGTATAGGGTAGATATTAGCGGTCGAGCGTGGGCTCTGGAAGGACTGGGTGAACTCTCGGCTGTCTCTCTCCCCGGGTGTGCGAGACCCCAGACGCCAGACAGTAAGAAATACACGTCGTTGGTACAACGGGCCCTGCCGTGAAAGGGCGCCAGAGGACAGCCCAGGATCTGGGGACGCAGGTGGGGCAGAGGGGCTGCGGGCGCAGCTGCCCTCCCCCTCCTTCCTTGCAG
Seq C2 exon
AGACCTTCCAGTTCGCCGACGTGGACCACAGTTACGTGCCCTCGCGGGCCGAGATCAAGAGGCAAGGTCAGCGGCTGATCGAGGAGAAACTCAAAGTGGCCAAGAAGAAGAAGAAGTGACCGGAGGAGGAGGAGGAGGCCGCCCTGCCCCCCACCCCGCCCCCACGCTTGCATTGCTTACACAAATAAACATTTTTCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTGAGGGATGTGTTGG
R:
TGGAAAAATGTTTATTTGTGTAAGCA
Band lengths:
289-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development