MmuINT0003720 @ mm10
Intron Retention
Gene
ENSMUSG00000026940 | Ccdc183
Description
coiled-coil domain containing 183 [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25608635-25609356:-
Coord C1 exon
chr2:25609260-25609356
Coord A exon
chr2:25608794-25609259
Coord C2 exon
chr2:25608635-25608793
Length
466 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TCCTTTTCTTGCCTGTTCAGAAA
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTTGACACAAAGGTGAGGGACACCTTGGAGTCATCAACTCTAAAAGAGAAACATAATACCAGAATTACCTTTGAGGACCCAGAGGAGGACATGATAG
Seq A exon
GTGAGGCTCTACATGCCGGCCACAGGAAGATGGAGAAGGACGACAAGAACAATAGCTGCAACTAGATAGGGTCTGAACTCAAGACAAGAGATGGCATACATGGTGACTGGGCGCTGAAGGGAAAGGTTTTAATCGATAGACGTTACAGAGGTTTCTTTTTCTGAGACAAAAGGGACGTATATCATGGGATGGGCCAGAAGGGAGCCCAGACCGAACTTTTAGAAGAATTTCTGCTACAGAGGCAAGGTGGGGTGAAAGGATAAGGACAGCTAGTGTGGATAATCTTGGCAAATCCTAGTTGTCTGGCACCTGGCCTTAGGTGACTTAGGGCAGGGGTCTCCAGTCATTGATACATGTCTGAAATGAGCTCCCGGCAGGAGATGGCCTATGGCAGCAAACGCCAACAGGTAGAGGTGGGAGGCTTCTGGAAAGAGGGTGGCAGCCACTCCTTTTCTTGCCTGTTCAG
Seq C2 exon
AAACCTTCCAGTTTGCGGATGTGGACCATAGTTACGTCCCTTCGCGGGCGGAGATAAAGAAACAGGCCCAACAGCTGATCGAGGCGAAGCTCAAGGGAGCCAAAAAGAAGAAAAAGTAAACCTGTCTGGGCTGTAGTACAGAAATAAACATTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940:ENSMUST00000028309:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACACCTTGGAGTCATCAAC
R:
TGTTTATTTCTGTACTACAGCCCAGA
Band lengths:
231-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types