HsaINT1048201 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:136806970-136807352:+
Coord C1 exon
chr9:136806970-136807066
Coord A exon
chr9:136807067-136807280
Coord C2 exon
chr9:136807281-136807352
Length
214 bp
Sequences
Splice sites
5' ss Seq
TCGGTACAG
5' ss Score
3.7
3' ss Seq
CTTGTTAATTTCTCCGAAAGGAG
3' ss Score
3.12
Exon sequences
Seq C1 exon
GGCGACACAAAGGTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTACAACACCAGGATCAGCTTTGAGAACCGGGAGGAGGATATGATCG
Seq A exon
GTACAGGCCCCGGAACTGGGGCCCGGGCTGCAGGCGGGTGGCTGGAACACAGGTCGGGGTGGCGCCGGCTCCCATCCCACCGGGACATCCTGGAGGGACAGCGGGGCTACAGGGTGCATCAGTTGTACCTGCAGGACTTTAATTGATGGAGGTGACTTAGTGATGCCATGGGGAGGCTAAAGCCACTGAAATACCTTGTTAATTTCTCCGAAAG
Seq C2 exon
GAGGAGGCATGCCATGCCAGACGGGCCCGGAGGAGAGGCACCAGGGCTGGAGCAGGGAGGAGCGCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213:ENST00000484858:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCCTGGAGTCCTCGAC
R:
CTTCACCGCGCTCCTCCC
Band lengths:
151-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains