BtaINT0082852 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046389 | KLRD1
Description
Bos taurus killer cell lectin-like receptor subfamily D, member 1 (KLRD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002890]
Coordinates
chr5:100097165-100098174:-
Coord C1 exon
chr5:100098023-100098174
Coord A exon
chr5:100097269-100098022
Coord C2 exon
chr5:100097165-100097268
Length
754 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TGGTCTCTGTTTCCATGCAGGCT
3' ss Score
9.69
Exon sequences
Seq C1 exon
GATCTGGCTGTTATTCTTGCCAAGAAAAGTGGATTGGCTACCAATGCAACTGTTATTTCATTTCTAATGAATTAAAAACATGGAAAGACGGTAGGGATTTTTGTGTTTCTCATAATTCCAGTCTACTTCAGATACAAACCAGAAATGAACCG
Seq A exon
GTAAGTATTTAATTCTTATTTTCTACATTTTATTTGACCCAGAAAAATATATTATCTATACTTTGATTCAAGTCTTTAATCAGATAGTAAATGGATGATTATATTTGAACTAATTTCCTATACTTTGAAACCACCATAAAATTGAGCCAAACTTTCTTTAAGGTTTACATTATAGGAGTGCTGACAGATAAAATATAAGAAAGTGTTTAGAGAGTATTCAAAGAAGAGATAATAGGTCATTAGTTTTATTCCAAAAACTTTAAACTTTTAGTTCAAGTGAATTTATAACTGATTTTGTAATTATACAACATTTGCTATCACTCAGGTATAATGTGAAATGAATATGTAGAATATTATAAAATAATAACCCAACTCTTAATAAAAAGTTCTGTAGCTTCCTGAAGAAACTGTGGTAAAGATTTATCCCTCCAGACGCGGTTGATTTGGGATCAGATTTGATTATTGATCCCATTTGAAGGAAGTGTTCCATGAAAACTCTCATACCTTTTATGACATCTTTCATTCCTTCAAGAAGTGAGATTTTTGTGGGGTTTTTTTTCCCTCCATAAATGAATGCGCTTGATGAATGAGAAATAGTAGGCATGTGACTGACTCCTTTTCCCAAATTAGAAGTTAAAAATTATTTTAGTGGGTATAATTGAAAAACTGATGTGGACACTGGCCCCCTTAAAAGTACGTGATTCCTAGAGTAGATTCAAAATAGATTAATATGTTGGTCTCTGTTTCCATGCAG
Seq C2 exon
GCTTTTATGAAGTTCAGTACCAGTTTTTACTGGATTGGGCTTTCTTATGATGAAGAACATCATGCCTGGTTGTGGGAGGACAATTCTACTCTCTCCCAAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046389:ENSBTAT00000037859:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(27.3=52.9)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGCTGTTATTCTTGCCA
R:
ATCTTGGGAGAGAGTAGAATTGTCCT
Band lengths:
254-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]