MmuINT0088269 @ mm10
Intron Retention
Gene
ENSMUSG00000030165 | Klrd1
Description
killer cell lectin-like receptor, subfamily D, member 1 [Source:MGI Symbol;Acc:MGI:1196275]
Coordinates
chr6:129595410-129596965:+
Coord C1 exon
chr6:129595410-129595561
Coord A exon
chr6:129595562-129596861
Coord C2 exon
chr6:129596862-129596965
Length
1300 bp
Sequences
Splice sites
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
3' ss Seq
TTCTTTCTGTCTCTAAGTAGAGT
3' ss Score
7.57
Exon sequences
Seq C1 exon
TTTCTGAATGCTGTGTTTGCCTGGACAAGTGGGTTGGGCATCAGTGCAATTGTTACTTTATTTCCAAAGAAGAAAAGTCTTGGAAAAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTG
Seq A exon
GCAAGTACTTCATTGTTTTTTACATTCTTTCACACTTACTAACATGCTACCTGACAAAACTGGCCACTCTCACGTAAGTCTTTACTACCAGGTCGACAGTGATGGTTCTGTCTGAGTTCATGGCCCTCATGATGTACCTTGAAATATACACTAGAAAGCACACACAAAAAAAGTCTTCAAAGATTTGTATTATAGGGGTTAATATATTAATAGATTAGGAGTTAATGTGCAAACCTCCAACATTTCCAGAATTAGTAGGCTAGTATTATTTTATTATATAATTTATTTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCTAGACCCTCCCCACCACTCCCCTACCCACCCACTTCCACTTCTTGACCCTTACTGAGGTATATAAAGTTTGCAAGACCAAGGGACCACTCTTCCCAATGATGGTTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGAGGACCAAAAGAGGAACTTTCAATTATTAATTATTACTATTATTAATTATTATTATTCAATTATTACTTATTGGAGCAGAATACACAAGCTTGTGCATGTTATATGGCTTTTTGTCATCTTTCTGGAATGTAAAGTAAAACCAGTAACAGATGATGTGATCATAAAATTACTCAAATCATTATTATTGTTATTGTGTGTGTCATAGGGGATTGAACCTAGGAATTGAGGCATGCCTGTTAGGCACCCTATCATTTTTTTTTTTAAATTTACTATGTGCTTTGAGACAGAGGCAGATATTCCTAGATTTCCTTTAAGCTCCTTTTATGGCCTTCAAATTGAACTTCTGCTTCAGCCTCCTAAGCTCCAGGGATTGCAGGCCTGTACCACCAGGTTCATCTTGGAAAGAACTCAGCTCTTATGAAAAAATTCTCAAGTTGTTCATGCCCTGCTCAGGTTGGAGAGGTTACAAGATGCTGGCACTGGGATCACATTTGATCTGTGATTCCATGAAGAAACTGTAACACAGAACGAAAGTCTCATTCTCTTTATGATAACTTTTATCTTTCAAGAGACAAAATTTTGTAGTGTTTTTCCACGAGTGAATGACCTAGTCACTGAAAAGTTTAAGGTATGTGATAATGCCTTTCATATCAGAATGATTTCAACCCGAGCATCCACAGTCTGAATCTTATTCTGGATTCCTTTTAAATATGTTGCCCTCAGAGCATGTTCAAATTTGATTAACTTGTTCTTTCTGTCTCTAAGTAG
Seq C2 exon
AGTTTTATGAACTTCAGTCAAACCTTTTTCTGGATTGGAATGCATTATAGTGAAAAAAGAAATGCCTGGCTATGGGAGGATGGCACAGTTCCCTCAAAAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030165:ENSMUST00000112063:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(27.6=52.9)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.7=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAATGCTGTGTTTGCCTG
R:
AATCTTTTGAGGGAACTGTGCCA
Band lengths:
254-1554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types