BtaINT0082855 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037534 | KLRF1
Description
Bos taurus killer cell lectin-like receptor subfamily F, member 1 (KLRF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099120]
Coordinates
chr5:100677078-100678639:-
Coord C1 exon
chr5:100678541-100678639
Coord A exon
chr5:100677234-100678540
Coord C2 exon
chr5:100677078-100677233
Length
1307 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
AAAATAATCCTCTTTTCAAGTTT
3' ss Score
4.81
Exon sequences
Seq C1 exon
ACTGTTCTGTGATGTCACACCGATATAAAATCTTATTGGGGATATCTGGAGGACTAAATGGCATTCTGGTTTTGACTTTGATCACCCTGAGTCTGTTAG
Seq A exon
GTAAGTTAAATGATCTTAATTAAATAAAAATATGAAAAATGTTTACTTGTTTCTTATTACTCTTTTCATATTCATTCATTATTCTTTACACTAACAAAGATTTAACTAGATTAAATTTAAAGATTTAATGATTTAACTATGTATAAAGCAATATATTATGCCCCACAGTAACATATTGATTAAGTATTTGAATCAGGTACATATTTTGTCCTCAAGTGGCATACAGTTTACTAGGAGAAAAGTGTATGTAAGTGTGTGTGTATGTAATGTGTTTGAAATCATACTTCAGGATTTCTTAGATATCTGTGAATAGATTGAATTACATTATTTTTCTTAAAAAAATTATACATTATTATTTAAGGTTGAATTCAGTTTACTCTTGATTTTGTCCAAATATTTGCTGAACAATCTTTAGACTCCAAACATTGCTACAAATCCTTCAAAAAAAAAGGAATAGTCATGGTGAGAAATCCCATATTTTAGTGGAAAAAACATTAAAAAAATTCAGGGTAGACTGGGCTAAATACAATGTATAGACTGAAGTAAGTCAGAAAGAGAAAAACAAATATTGTATATTAACATATATATATATACGAAATCTAGAAAAATGGTACTGATGAACATATTTGCAGAGCAGGAATAGAGATGCAGATGTAGAGAACGGACTTGTGAACACAGAGTGGGAAGAGAGGGTGTGACGAATTGAGAGAGTAGCACTGGCATATGTACATGACCATGTGTAAAATAGATTGCTAGTGGGAAGTTGCTGTACAGTACAGGGAGCTCAGCTCGGTGCTCTGTGATGACCTAGAGGGGTGGGATGGCTGTGGAGAGGCTCAAGAGAGAGAGAATACATGTGTATATATATAGCTAATTCACTATGCTGTACAACAGAAGCTAACACGACATTTGTAAAGCCACCATATTCCAATAATTAAATAAAAAAGGAATGAAAATGCACCTGTTGGTGCACTTAAAAAATGCATGGAAAAAAAAAAAAAAGCATGGAAAGAGCATGCATAACCCCTAGAACTAGAACTTTGCTGTATTTATTATTGTATGACAAATTCTTAGGACAATGCCTGGCACAGAATAGATCCTAAGCAAATACAGGTGCTATACATGAATTCATTGTGTAATACTTTAATTCACTTTTCATTAAACACAAACATGTTTTAAAAGAAAATTTATCATTATCCCTTCAGTTATTTCTTGTTCCAACCATCTGAATTGTTCTGAAGAATTTGTCTCTGAGACATTGCCTAGAGAAGATGTTTTCTCAACCTTAAAATAATCCTCTTTTCAAG
Seq C2 exon
TTTCTCAGGAAGTGCTGCCAAAATGCCTAAAACAGTATAATTCAAACATCACCCAGCATGATGATACTGGATACTTGGAAGTCAATAGTGACACAAGAGGCAATATACATAAGAAAGATGCAGACCACTGTGTTTCTAGAGCTACAGGTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037534:ENSBTAT00000042955:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCACACCGATATAAAATCT
R:
TTTATGACCTGTAGCTCTAGAAACAC
Band lengths:
246-1553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]