HsaINT0088977 @ hg38
Intron Retention
Gene
ENSG00000150045 | KLRF1
Description
killer cell lectin like receptor F1 [Source:HGNC Symbol;Acc:HGNC:13342]
Coordinates
chr12:9832316-9833452:+
Coord C1 exon
chr12:9832316-9832414
Coord A exon
chr12:9832415-9833302
Coord C2 exon
chr12:9833303-9833452
Length
888 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AAAATAGTCCTGTATTCAAGTTT
3' ss Score
1.26
Exon sequences
Seq C1 exon
ATTATTCAGTGACGTTGCACTGGTATAAAATCTTACTGGGAATATCTGGAACCGTGAATGGTATTCTCACTTTGACTTTGATCTCCTTGATCCTGTTGG
Seq A exon
GTAAGTTTAGAAGATCTTAATTAAATAAAAATATGAAAGATGTTTACTTGTCTCTTATAAATCTTTTTATAATTATTCATTCATTCTTCACTACATTAACCAAGATTGAATTAGAAGCTACTGCATGTAAAGCTCTATTAGTACACTCCACAGTGCTATATTTAATATGCAGTCAAATCAGGTAAGTATCTTGCCCTCAAGTGGCATACAGTCTAATACGGAGAAAGGAGTGTATGTGTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGGTATTTGAAACAGTTTTTCTGTGTTTCTTGGATACTTTAATAGATAAAATTTTACTGTTTTGCTTAAATATTTTAATACATTTTATCTAAGGTTGCATTTAGTTTGCTTTTCCTTTTGTCCAGCAAATATTCACCGAGCAGCTACAATACTCCAAATATTACAAATTCCCCAAAATTTTTAAGAAAAGAATAGTCAGGGTGAGGAATGTGATATTCTAGTGGGAGAAGCAGGTACTAAGTAATTATGGTACAATGTTCTGACTACAGTGTTGGAGGCTGCAGAAAAACATTAAGAAAGGATGAAAAGAGCCTATATACTTCCCAGAGCAGAAACTTGGCTTTATTTATTATTGTATTACCAGTTCGTAGGAATGCCTGGCATAGAATAGATTCTCACCAAATATGTGTTGTATAAATGAATTGATTGTATAATATTTTGAATTCTTTCCATCAGTAGACATGAAAATTTTAAAAAGATCCTAGTGACCGTTTCAATTATTTCTTGTTCCAATCATCGGAATCATTCCATTGAATGTGTCCCTGAAACATTCCATAGAGAAGATATTTACCTAACCTTAAAATAGTCCTGTATTCAAG
Seq C2 exon
TTTCTCAGGGAGTATTGCTAAAATGCCAAAAAGGAAGTTGTTCAAATGCCACTCAGTATGAGGACACTGGAGATCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATAAGGACCTTTGTGCTTCGAGATCTGCAGACCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150045:ENST00000617889:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGTGACGTTGCACTGGT
R:
CTGTCTGGTCTGCAGATCTCG
Band lengths:
246-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development