BtaINT0084071 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33246056-33247158:-
Coord C1 exon
chr24:33247112-33247158
Coord A exon
chr24:33246156-33247111
Coord C2 exon
chr24:33246056-33246155
Length
956 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGATTAATTTTCTTTTAAAGGGC
3' ss Score
9.46
Exon sequences
Seq C1 exon
GCTCCAGCAACGTCTGTGACCCAGCCGGAACTGTGGACTCCAGTTTG
Seq A exon
GTAAGTAGAAGATTGTTAAAGCATTGCAGTTCTAACTATTATTCTGATATTTATTTGAGACTGACACATTTGTGAGCTTCCTGAAATTCAAAGTAAATTAAAATACGACCTGAGGCTGAATTGCTTGATGAGGCTATCGCTCTTTTTCAAAGTGCATATATGATATTGTAATTTCTTTTGGTCAAAACCAAAAGAATACAGTTTATTTAAACTTTTGTAGAATTGTAGAGTCCTAGTGTTCCTCTGAAGGCATTACCTCCCTAGAGACCTGCATATAAGCCTGACATAGATAATTAAAATTAAAAAAATCAAAGGCCAGTAAACGTTTAATTAAGCTGTCTGTGTACAGAGTAATTGTAGTCTGCTTGATGTTACTCCAAGCACAGTGCTGTGGCATTCTGATTCATTTTCTAAGCAATTTAGAAATTATCTTCTTAGCCTCAGAGCCTGCAAAAGCTGGAACCCCAGGTTCTGGAGGGAAAGTAGGAGAAAGTTCTCTATCCTCACTGTGGGACTTGATGATGTTTAAGCAAGGAGGTGACTCTTGCATATTATAAACACACTTGCAGATAAATCTAATTTCTACTGAATTTCAGCAAGTTAAATGTTCAGATATTTTCCGTTTAGATTTATATCCACGGTGTAACAGAATCCACAGATAATGACCATGTTGTAAATAAGAATCATTAAGATTTTCTCCTAATGATTTTTTCTTATTCTGAATTTTCCAATTTTGTTTTAAGCACATATATGGATTCTGTGTATAACAAATAAGCAAATAGTAAAACAAAAGCAATTAGCACATTGTTAAAATCAACCCAGTACTTTCACTCCCCCTGAATATACTTAATTTACTTTTCATGGCCAAAATATATTTCTGTGACAAGCTTTTCTCAGAATGCTTGTTTGGGAACCTCTTCATTCTAAGATGTCAGATGATTAATTTTCTTTTAAAG
Seq C2 exon
GGCCATTGCCAATGCAAGCTTCATGTTGAAAGTCCTTCGTGTAGCATCTGCAAACCATTATATTGGAATCTGGCCAAAGAAAACCCTGATGGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(9.8=31.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]