GgaINT0098633 @ galGal3
Intron Retention
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106317902-106319437:+
Coord C1 exon
chr2:106317902-106317948
Coord A exon
chr2:106317949-106319337
Coord C2 exon
chr2:106319338-106319437
Length
1389 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TAACTCATTTCTGTCATTAGGGC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GAATCAACAGTGAATGTAACCCTTCAGGTAGCGTCGATTCTCATTCT
Seq A exon
GTAAGTATTCTATTACTGCAGATAGCAGTATTTGTTAACAGTTCATGTACAGTCTAGGTCTTTGCTGAACACATTCACTTCATTCCCTAAGTGCCTGAAGCCTAATCTTCGACTGTGAAAGAATTACATAGGCTTATTTGCAGAGTGAGAGTGGAAATGACCTTTGTGTTTTGCTCTTTGATCATATCAATGCAATTCCAGCTTGAGGGTGACAGTGGTTGTTCTTTTTATATATTTTAAATGTGGAATATGCATACTGTTTATGTACTTGGTGCTCTAGAATAATAACATATACATGCAGATACGCATTTGTGCCTGTGCATGTCTGATTCTAGGTTGATATAGAGCATTTTAGCACCAAATTATTCTTGAAAAAAATATTCTTAGTAACTGCTGATATTCTGCTATTATCATTCTTAATACTGTGATAGTTATTAGTAGCATGCTATCAGAAATCAGAAGTCAGGATCAGAAACTGTTATAACCCATATATATGGGTTGTGGTGAAGACTGGCAGATGGAAGAGTTAGGCTCATGTATACATCTGTGTGTGTTTTCCACATTTTCTTTAAGTTAACCATACGTAAGCCAGTTACTCCCTGGGAACAGTGCTGATATATCTGAGCAAATAGTACTGCTGAAAGACATCCATGACTCCTTTGCAGAAAAGGATAGAAAAAAGAAGCTATGAAAAACAGAATTCTGTGGTATTTGCCTCTGCTTGTCCATAAGAACAGATGCATATAGGAGTAAAAAATGTTACTGTTGCCTCGGAAAAATATGCTTTAGTTTTTAATAATTATTTTTTCAATTATTTGTAAGTAGAGAATAGGAGAAAATATGACGAAGATAAGAAAAATTGTGCCTAAATCAATTTTACAGAAAGAAATGGACATCATATCTACTTCTAGTTAGTATGGCATTACTATAATTTGAAAAAATTACTGGTAATGTTAACATTTTTCATCTGAGTTGGTACGCTTTACTACTGTCTTTTCTACTCTGCCCTCCTAAGAAAAAGAGAGCAATAAGGGAGGGAAAAAAACATGAAAATTAATGATTACTTTTAAGGAAAATTGTATTTTTAAAGTTTTTACATAGCAGTTAATGCTTTAGAACAGTTCTAACAAGTCCATGAAAGAATTAGAAAGTGCAACTGTTGGGAGATTTAGAATAATTAGATATGGAAAAATTAGCAGTCTGAAACAATCCTGTGCTGATAGCATGAGAAAGAAAAATCTAAGGAGTGTGAATCTGCCTCAGTTTCCATGCTTCTGTGAAAGTCAGTAAGCTGCCTGAGTTGCTCTTAATATTTGATTATTCTTAGTAGTAAAAACTATGTGTTTCTGTGAAGCAGGTGAGTTTATATTAACTCATTTCTGTCATTAG
Seq C2 exon
GGCTATTGTCAGTGTCTTCAGCATGTTGAAGGTCCTACGTGTAGTAAATGCAAACCGTTGTACTGGAACCTGGCCGAAGAAAACCCTGAGGGATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056:ENSGALT00000024287:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(4.2=12.5),PF0005319=Laminin_EGF=FE(29.4=100)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(60.8=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]