RnoINT0003541 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3799832-3803682:+
Coord C1 exon
chr18:3799832-3799878
Coord A exon
chr18:3799879-3803582
Coord C2 exon
chr18:3803583-3803682
Length
3704 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CGTTTGATTTTCATTTCCAGGGT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GGTCCAGCAGTGTTTGCGATCCAGCTGGGACCATGGACTCCAGCTTG
Seq A exon
GTAAGTAGGGGCCTCTATGAAAGGTCATGGCTACCCTGTGGAAACTTCCTGAAATTAACATAAGACACAATTTGCTTAAACTGGGCAACCTCATGATTTTAAATTCTAGATGCATATGTATTTTTTACTAAAAAAAATAGTAAGGTTTACTTAAATTTCGCATCCTGGAGTCCTGCAGTTAGTTTTTCCTGGAGGTTACTTACAGAGGACTCAAGTTCAGTTCCCAACACCCACCCACATGGTGACTCACAGCCATGCTTAAGTCTAGTTCTAGGGGATCACGTGCCTGCTTCTGGCCTCCCCGGGCACCAGGCACACGTATGGTGTGCATATATACATGCAGGTAAAACACTCAAATGCATCAAATAAAAATACCCCTCTTTTTTATTACTTTTAATTTTTTTACAGTCCAGTATTTTCCCCCCTCCAGGTTTGCCCTCTTATGGTTTCTCATCCCATTCTTCCTCTCCCCGGTCTATCCCTCTCCGCCCCTCCTCCTGCCAGGCCTCCCCACTCCCTGGGGCCTCGAGTCTCTCCAGGGTTAGGTGCATCTTCTCTTAGGCAGTCCCCTGCTGTATATGTGTCAGGGCCTCTTATCAGCTAGTGTACGCTGCCTGGTTGGTGGCTCAGTGTCTGAGAGGGTCCAGGTTAGTTAAGACTGCTGGTCCTCCTATGGGGTCACCCTCCTCCTCAGTTTCTAACAGTTTTTCCCTCATTCAACCACAGGGCCCCCTGGCTTCCTTCTCTTGGTTGGGTGTAAGTATCTGCGTCTGTCTCAGTCAGATGCTTGTTGACCTCTCAGAGGACAGCCATGCTAGGCTCCTGTCTGTAAGCACACCATAGCATCAGTAATAGTGTCAGGCCTTGGAGCCTCCTCTTGAGATGGATCCCAATTTGAGCCAGTCACTGGACCTCCTTCCCCTCAGTCTCTTCTCCATTTTTATCTCTGCAGTTCTTTTAGACAGGAACAATTCTGGGTTAGAGTTTTTGACAGAAGCAACCCCATCCCTCCACTTGATGACCTGTCTTTCTATTGGAGGTGGACTCTCCAAGTTCCCTCTCCCCACTGTAGGGCATTTCATCTAAGGTATCTCCCCTTGAGTCCTGACTATCTCCTCACCTCCCAGGTCTCTGGTACATTCTAGAGAGACACCCCACTTCCCACCTCCAGAGATTGCATATTTCCATTCTTTCTGCTGGCCGTTAGGGCTTCTGTCCTGTCCCCCAACACCCCCTCCCAATTTCTGATCATGCTCCCCCTTTCCCCTCCATCTCTCCTCTCACACCCAGGTCCCTCCCTCCCTCCCTCCCCCCCCAATTGCTTTCTTCTCCCAAGTGGGATTGAGGCATCCTCACTTGGGCCCTTTGACTTGTCTCCTGGGTATTCTGTACTTTTTTGACTACTATTCACTTATCAGTGAGTACATACCATGCCTGTCCTTTGGGGTCTGAGTTACCTCACTCAGGATGACATTTTCTAGCTCATCCATTTGCCTGCAAAATTCACCATGTCCTTTTTCTTATTAGCTCAGTAGTATTCCATTGTGTAAATGGACCACATTTTCTGTATCCATTCTTCTGTTGTGGAACATCTGGGTTGTTTCCAGCTTCTGGCTATCATAAATAAGGCCACTATGAACATAGTGGAGCACGTGTCCCTGTGGCATCATGGAGCATCTTTTGGGTGTATTGCCCTAGAGTGGTACAGCTGGGTCTTCAGGTAGATTATTTCCAATTTTCTGAGGAACCTCCAGATTGATTTCCAGAGTGGTTGTACCAGTCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCTCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTAGAATCTCAGGGTTTTGATTTGCATTTCCCTGATTACTAAGGACTTTGAACATTTCTTTAAGTGCTTCTTGGCCATTCAAGATTCCTCTGTTGTGAATTCTCTGTTTAGCTCGATACCCCATCTTTTGATTGGGTTGTTTGGGTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTGGAGGTTAGCTTTTTGAGTTATTTATATTCTTTGGATGTTAGCCCCCTCTCGGATATGGGGTGAGTAAGGATTTTTTTTTGTCCCAATCTGTAAGTTGCCAAGTTATCCTTATTGACTATGTCCTTTGCCTTATAGAAGCTTTTCAGTTTCACAAGGTCCTATTTATCAATTCTTGATCTTAGAGCCTGAGCCATTGGAGTTCTGTTTAGGAAATCCTACCCCCCAACCCCATGCCAATGAGTTTGAGACTCTTTCCTGCTTTCTCTTCTATTGGGTTCAGTGCATCTGGTTTTGTTTTGAGGTCCTTGATCCACTTGGACTTTAGCTTTGTGCAAGGTAACAAATATGGAACTATTTTCATTTTTCTACATACCGACTGTCAGTTAGACCAGCACAATTTATTGAAGATGCTTTCTTTTGTTCATTGCATATTTTTGGCTTCTTTGTCAAGTGTCCATAAGTGTGTAGTTTTATTTCTGGGTCTTCAATTCTATTCCGCTGATCTACCTGTCTGTCTCTATACCAATGCCATGCAGTTTTTTTTTTAAATCACTATTGCTCTGTAGTAGAGCTTAAGGTCAGGGATGGTGATTCTCCCCAGAAGTTTTTTTATTGTTAAAAATTGTTTTTGCTATCCTAGCTTTTTTTGTTTTTTTTTTCCGTATGAAATTGAGAATTGCTCTTTCCATGTCTTTGAAGAATTGTGTTGCGGTTTTGATGGCAATTGCATTGAATCTGTAGATTGCTTTTGGTAGAATGGCCATTTTTACTATGTTAATCCTACCAATCTACGAGCATGGGGGACCTCTCCATTTTCTGAGGTCTTCTTATTTCTCGAGAGACTTGACGTTCTTGTCATACATATCTTTCACTTGTTTGGTTAGAGTTACACCAAGATATTTTATATTATGACTATTGTAAAAGGTGTTGTTTCCCTATTTTCTTTCTCAGCCCATTTATCATTTGTATCAAGGAAGGCTACTGATCTGTCTGAGTTAATTTTATATCCAGCCACTTTGCTGAAGTTATTTATTAGTTGTAGAAGTTCTCTGGTGGAATTTTTGGAGTCACTTATATCTACTATAATATCATCTGCAAATAGTGATATCTTGACTTATTCCCTGCCAATTTGTATCCCGTTGATCTCCTTTTGTTGTCTTATTGCTCTAACTAGAACTTTGAGTACTGTATTGAATAGATACAGGGAAAGTGGGCAGCCTTCTCTAGTTCCTGATTTTAGTGGGATTGCTTCAAGTATCTCTTCATTCAAATTTATATTGGCTATCGGTTTGCTGTATATTGCTTTTATTATGTTTAGGTATGGACCTTGAATTACTGATTTTTCCAATACTTTTAACATGAAGGGATGTTGTATTTTATAAAATGCTTTTTCAGAATCTAATGAGATAATCATGTGATATTTCTTTGAATTTGTTTATATTTGTTCCCAGCTGCTTTGGAATGCCCCCCCCCTTTTCAAGTTCAAAAGACTCTTTAAAGTAATCCTGGGCTTTAGTAAATCCCTTGGCTTATCTTTCGTGGTCAAAATTTATTTCGCTAACAAAGCTTTGCTGAAAACACACATTTGAAACAGGTCTTGACTTCAAAATGCCAGATATCGTTTGATTTTCATTTCCAG
Seq C2 exon
GGTTACTGCCAGTGCAAGCTTCATGTTACAAGCCCTACATGTAGTGTCTGCAAACCACTATATTGGGATCTGGCCAAAGAAAACCCCCGTGGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(9.8=31.2),PF0005319=Laminin_EGF=FE(29.4=100)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(60.8=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]