BtaINT0084080 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33229738-33230490:-
Coord C1 exon
chr24:33230393-33230490
Coord A exon
chr24:33229892-33230392
Coord C2 exon
chr24:33229738-33229891
Length
501 bp
Sequences
Splice sites
5' ss Seq
GAAGTTAGT
5' ss Score
2.87
3' ss Seq
TTTTGTTGTTGTTGTTGAAGTTG
3' ss Score
4.16
Exon sequences
Seq C1 exon
GACTACCTGGTGCTGCTCCCCAGGGACTACTATGAGGCCCCCTCGCTGCAGCTGCCAGTCACAGAGCCGTGTGCCCACGTGGGCCATCCCCAAGAGAA
Seq A exon
GTTAGTATGGGCGGCCGGTGCATCATCGGGTCTTCTAACTCAGGAGCCTTGGGTTCAAGGATTCTCAATAGCCCTCAGGATCATGACTGCACAGGATGCTCTGGTTAATGACTCAATTGTGCCTTTTCTCTGTGGCAGTGACTGTGTTTCATGTAAGACTCACAAAGCACTTTGTACCCCGTAGCTAGGGCTTCAGAGTGATTCTCACCCTCTTACATGAGGAAGTGGCGATGTGTGCCCAAGTAATACGCTCAGGGTCATGCATCTAGTGAGGGGAAGAGCTTACAATGAATCTGAGTTTGTGGACCACTGCTTCTCCCATTCCTCATGCAGATGAAAATTTATCGCATGGTCCCTGTAGTAAGCACTTAGTAAGAGTTTGTTGAAGAGTGATGAGTGAATGAATGAATGCATGGGATGGATAAGAGTCCTGGGGGTGAACTTTGATCCTCTGTGTTATGTTCTCATTGTAACTGTTGCATTTTGTTGTTGTTGTTGAAG
Seq C2 exon
TTGTTTGCTTTACCAGCATTTGCCAGTAACCCGATTCCCCTGTGCCCTGGCTTGCGAGGCTAGACACTTCCTGCTTGATGGGGAGCCGAGACCTTTGGCGGTGAGGCAGCCCACCCCCGCACACCCGGTCATGGCGGACCTCAGTGGAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACCTGGTGCTGCTCCC
R:
CTCTCTTCCACTGAGGTCCGC
Band lengths:
252-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]