RnoINT0003550 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3815002-3815697:+
Coord C1 exon
chr18:3815002-3815099
Coord A exon
chr18:3815100-3815543
Coord C2 exon
chr18:3815544-3815697
Length
444 bp
Sequences
Splice sites
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
3' ss Seq
GTCTTTTGTTGTCGTTGAAGTTG
3' ss Score
4.59
Exon sequences
Seq C1 exon
GATTACCTGGTGCTGCTTCCCAGGGACTACTATGAAGCATTCGCCCTGCAAGTGCCAGTCACAGAGCCGTGTGCCCACACAGGATCTCCCCAGGACAA
Seq A exon
GTTAGTATGGGGAGGAGGGTGTAGCCTCAATGCCATCAGACACCTCTGAACGAGCTTTGAATGTGAAGGCTCAGATGGTGGGCCTTATAATCCCAACTGTTACAGGATAGCCCGACTGATAGTTTCGTTGTGATTTGTTTGTTCTGAGTATTACTTGAGTAAGAATCCCCAAACACATTGCATGTAGGGATGCTTCAGCATACCCCAAAGTCATCTCGAAGCTATGCATCTGGTGAGAGGAAGAGCTTAAAATAGAGTGCATGTTCTCAGACCTTTATTCTTCCCTTTGTGGTATGGAACTCACTACTCGATGCTGTTGATGTCCATTTACTAAGACTTGGTTGAAAGAAGGATACAAGGATGCCTAGTGGCATGACCTCTGAGTCCTTGCAGCACGCCGTATCATGCTCCTGTGATAACAACTGTCTTTTGTTGTCGTTGAAG
Seq C2 exon
TTGTTTGCTTTACCAGCATTTACCACTGACCCGATTCTCCTGTACCCTGGCTTGTGAGGCCACACACTTCCTGATTGATGGAGAGCGGAGACCCTTGGCAGTGAGGCAGCCCATGCCCACACACCCAGCCATGGTGGACCTCAGTGGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTACCTGGTGCTGCTTCCC
R:
CTCTGTCCCACTGAGGTCCAC
Band lengths:
252-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]