BtaINT0084086 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33208879-33209225:-
Coord C1 exon
chr24:33209099-33209225
Coord A exon
chr24:33209019-33209098
Coord C2 exon
chr24:33208879-33209018
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCTGCCTCCCTCTGCCCCAGGTG
3' ss Score
9.74
Exon sequences
Seq C1 exon
AACCAGGTGACCCTTCGAGGACTAGTACCACGCCCAGGTCGGTATGTCATTGTTGTCCATTTTTATCAACCAGCACATCCGACGTTCCCAGCACAGGTGTCTGTGGACGGAGGACGGCTGCAAGCAG
Seq A exon
GTGAGCTACAGGGAGCAGGGCTGGTTCGGGGCTCACCTGTCCTGGCAGGGGTGTGACAGGGCTGCCTCCCTCTGCCCCAG
Seq C2 exon
GTGTCTTCCGGGCCTCTTTTTGCCCCCATGTGCTTGGCTGCCGGGACCAAGTGATCAGCGGAGATGAGGTTGAGTTTGACATCTCGGAGCCGGAGGTGGCCCTGACTGTGACAGCTCCAGAAGGAAAGTCCTTAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGTCGGTATGTCATTG
R:
ACTCAACCTCATCTCCGCTGA
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]