RnoINT0003556 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3836945-3837289:+
Coord C1 exon
chr18:3836945-3837071
Coord A exon
chr18:3837072-3837149
Coord C2 exon
chr18:3837150-3837289
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGTGCCTCTCCCTCCCCAGGTT
3' ss Score
10.11
Exon sequences
Seq C1 exon
AATCAAGTAACCCTGAGAGGACTCATACCACACCTGGGCCGACACGTCTTTGTCGTCCATTTTTATCAAGCCGAGCACCCGGGGTTTCCCACTGAGGTGGTTGTGGATGGAGGAAGACGGTGGTCAG
Seq A exon
GTGAGCATCCATGCGCAGGCTCCAGGATGTGTGCCTTATCATCCCAGCAGTCGCCTGACAGTGCCTCTCCCTCCCCAG
Seq C2 exon
GTTCCTTCCGTGCCTCCTTTTGTCCCCACTTACTTGGCTGCCAGGACCAAGTGATCTCTGAGGGCCAGGTGGAGTTTGACATCTCAGAAGCAGATGTAGCTGTGACTGTGAAGATTCCAGATGGAAAGTCCTTGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCATACCACACCTGGG
R:
AGAGATCACTTGGTCCTGGCA
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]