BtaINT0084195 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55410877-55411729:+
Coord C1 exon
chr13:55410877-55411030
Coord A exon
chr13:55411031-55411553
Coord C2 exon
chr13:55411554-55411729
Length
523 bp
Sequences
Splice sites
5' ss Seq
GATGTGCGT
5' ss Score
4.37
3' ss Seq
ACATCGCCCTGTCCCTCCAGGTG
3' ss Score
11.98
Exon sequences
Seq C1 exon
CTGCCTCCTCTACACCCACCTACCCCTGGATGGCTTCCCCTCCGCCGCTGGGCCCGAGGCCCTGTGTCGCCATGACAACAGCCTACCCCGGCCCTGCCCCACAGAGCAACTCAGCCCCGCGCACCCGCCGCTTGTTGTCTGCTGGGGCACTGAT
Seq A exon
GTGCGTGTCCCCGGGGCCCCTTGGGGACAAGTAGGATCAAGCCCTGGGGAGGCGTGCCTTTGGTCTGGAGGATGGGGGTCCGTGTTGCAGAAGGGACATGGGTGCAGGGCAGAAGTGATGCGGGCATGGCACAGTTAGTGGCTCAGGCAGCGCTTGCTGCCTTCAGGACTTTGACCTTGAGAGTCAGTGCCTGGGGCCTCAGCTGTAAATGGGGTGAGGGTGGCCCAGCACTCCAGCTTATCATGAGGGGGTGGCAGGTCATTGGTTCACTTCAGGCACCAGACACTCTGCAGTGATGAGGCTGGTGGGCCACGATGGGCAGGGGAGGCTCAGAGTGAGCAGAGGTTGGAAGGTCGAGTGGCCACAGGAGGAGTGCCTCCAGCAGCAGGAGTGGTGGGCACACAGGCCCTGAGACGGGAGGACGAGGCTCTGGGCACAGAGGATGGGAAGGGCCGTGTTTAGGAGCACCCTGTTCTCTTGGAGGGGGCCTGGGGTGGGGCCTCACATCGCCCTGTCCCTCCAG
Seq C2 exon
GTGGACGTCCAGCTTCAGGTGGCAGTGCCGCAGCCAGGCCCCTATGCCCTGGTGGTGGAGTATGCCAACGAGGACGCCCGCCAGGAGGTGGATGTGGCAGTGCACACCCCCCAGAGGGCCCCCCAGCAGGGGGTGCTGACCCTCCACCCCTGCTCATACAGGTGTGTAGGGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061:ENSBTAT00000003981:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTCTACACCCACCTAC
R:
CCACTCCCTACACACCTGTATGA
Band lengths:
328-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development