RnoINT0084011 @ rn6
Intron Retention
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175571445-175572067:-
Coord C1 exon
chr3:175571914-175572067
Coord A exon
chr3:175571606-175571913
Coord C2 exon
chr3:175571445-175571605
Length
308 bp
Sequences
Splice sites
5' ss Seq
GATGTGGGT
5' ss Score
2.02
3' ss Seq
GTCACTCTGCCCTCCCTCAGGTG
3' ss Score
10.21
Exon sequences
Seq C1 exon
CTGTCTCCTCTATGCTCACCTACCCCTGGATGGCTTCCCTTCCGCTGCTGGAACTGAGGCCCTGTGTCGCCATGACAACAGCCTGCCCCGGCCCTGCCCCACAGAGCAGCTCAGCCCCTTACACCCGCCCTTGGCGACCTGTGCCGGCAGTGAT
Seq A exon
GTGGGTACCTGAGGGTCTGTGCGGGAGCGGTTGCTGTGGACATTAGACTGGAGGAGGGGCCTGTCAGTGGTGGAGTGGGTGCAAGGCAGGGTGGTGAGATGGTGGCACTACCGTGCATGGCCCAGAGTGGCTACTGCTGTCCCCAGTGGACAGTGGGTGTAAAGCAGGAGCTCACTTAGCTTCTGCTTCCTCCTTTACCTGGATTGGCCTTCTCCTGCTTGGCGATGCCCTGGGGTCCAAGTGTAGCTGTAGGCAGCTACCGGGAAGGGTGAGGACCATGGGGCTCCGGTCACTCTGCCCTCCCTCAG
Seq C2 exon
GTGGACATCCAGCTTGAGATGGCGGTGCCTCGGCCAGGCCGATATGCTCTCGTGGTGGAGTACGTCAGTGAGTATTCACACCAGGAGATGGGCGTGGCTGTGCACACCCCTCAGAGAGCCCCGCAGCAGGGGATGATCGACCTCCACCCCTGTCCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691:ENSRNOT00000081226:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCTATGCTCACCTACCCC
R:
TGTAGGGACAGGGGTGGAGG
Band lengths:
310-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]