BtaINT0084391 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022635 | LAMC1
Description
Bos taurus laminin, beta 2 (laminin S) (LAMB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046247]
Coordinates
chr22:51468154-51468821:+
Coord C1 exon
chr22:51468154-51468395
Coord A exon
chr22:51468396-51468472
Coord C2 exon
chr22:51468473-51468821
Length
77 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
ACTTGTTCTGTGCCTGGCAGGTG
3' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCCTATGACACCATCCGCCAGGCCCACAGCCTGTCTGCAGAGGCAGAACGCCGTGCCAACATGTCGGCCCTGATAGTGCCCAGCCCTGTGAGCAACTCAGCAGACACCCGGCACCGGACAGAGTCCCTGATGAGTGCCCGGAGGGAGGATTTCAACCGCAGGCACATAGCCAACCAGCGGGCCCTGGGCGAGCTCTCTGCCCGTACCCACGCCCTGAGTCTGACAGGCATCAACGAACTG
Seq A exon
GTAAGGCTCAGTGTGGGGTGGGACATGTGGGTGTGGCTGTTCCTTCCCCCAGCCCTGACTTGTTCTGTGCCTGGCAG
Seq C2 exon
GTGTGTGGGTCCCCAGGAGATGCGCCCTGTGCTACGAGCCCCTGCGGGGGTGCCGGCTGCCGGGATGAGGAGGGGCAGCCCCGCTGTGGGGGCCTCAGCTGCAGTGGGGCAGCAGCCATGGCGGACCTGGCGCTGGGTCGGGCCCGCCACACACAGGCAGAGCTGCAGCGGGCGTTGGCAGAAGGCGGTGGCATCCTCAGCCAGGTAGCTGAAACCCGTCGACAGGCAGGCGAGGCCCAGCAGCGGGCCCAGGCAGCCCTGGACAAGGCTCATGCGTCCAGGGGCCAGGTGGAGCAGGCCAACCAGGAACTGCGGCAACTTATCCAGAATGTGAAAGACTTCCTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022635:ENSBTAT00000057452:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF041117=APG6=PD(7.7=14.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGGATTTCAACCGCAG
R:
CCCTCCTCATCCCGGCAG
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]