RnoINT0084123 @ rn6
Intron Retention
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117278190-117278860:+
Coord C1 exon
chr8:117278190-117278431
Coord A exon
chr8:117278432-117278511
Coord C2 exon
chr8:117278512-117278860
Length
80 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ACTTGTTTTGTGCCTGGCAGGTG
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTGCCTATGACAGCATCCGACATGCCCACAGTCAGTCTACAGAAGCAGAGCGCCGGGCCAATGCCTCCACCTTTGCAATACCCAGCCCTGTGAGCAACTCAGCAGATACCCGGCGTCGGGCAGAAGTGCTAATGGGTGCCCAAAGAGAGAACTTCAACCGCCAGCACTTGGCCAACCAGCAGGCACTTGGACGGCTGTCCACACACACCCATACCCTGAGCCTGACGGGAGTAAATGAGCTG
Seq A exon
GTGAGGTGGCAAGCATGGGGAGGGACAGATGGGTGTGGGTGATTTTCCCACAGAACCTTGACTTGTTTTGTGCCTGGCAG
Seq C2 exon
GTGTGTGGGGCCCCAGGGGACGCACCCTGTGCTACCAGCCCTTGTGGGGGTGCTGGATGTCGGGATGAGGATGGGCAACCCCGCTGTGGTGGCCTCGGTTGCAGTGGAGCAGCAGCCACAGCAGATCTAGCACTGGGCCGGGCTCGGCACACACAGGCAGAGCTGCAGAGAGCGCTGGTAGAAGGTGGTGGCATCCTCAGCCGAGTGTCTGAGACTCGTCGGCAGGCAGAGGAGGCCCAGCAACGAGCACAGGCAGCCCTGGACAAGGCTAATGCTTCTAGGGGCCAAGTGGAGCAGGCCAATCAGGAGCTTCGAGAACTTATCCAGAATGTGAAGGACTTCCTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768:ENSRNOT00000072098:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.386
Domain overlap (PFAM):
C1:
PF041117=APG6=PD(8.3=16.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCACACACACCCATAC
R:
GTGCTAGATCTGCTGTGGCTG
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]