BtaINT0084411 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000793 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr16:65761742-65762556:+
Coord C1 exon
chr16:65761742-65761891
Coord A exon
chr16:65761892-65762411
Coord C2 exon
chr16:65762412-65762556
Length
520 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
GCTCTCTTCACTCCCTGCAGATT
3' ss Score
10.69
Exon sequences
Seq C1 exon
CCATGTCGAGTCAGCCAATAACATGGAGCAACTGGTCAGGGAAACTGAAGACTACTCCAAGCAAGCCCTGACCTTGGCGCGCAAGGCTGCTGCTGAAGGAGGCAGCAGTGGCAGCCTCCGTGGCTCCGTGGTGCAAGAGCTTGGGGGAAA
Seq A exon
GTACGTTTCAGCAGGTCCTCACACGGGCCAATATAATCTGCTCCCTCCCAGGGTACAATGCAAACCAGGTCTGAGGAGTGCTGTGTTCCTTTAAAAGTATCAATAGTGAGAAGGACAAGAAATGAGAGTGTTACTTTGGAGGAAAGCAGATGCCTTTAAGACTGGAAGAAAAACGTCAATTACTCTAAGTAAAGTTTCAGTTTTGATTTATAGATTGTATATTTGTAGATATGGTACCATCCGTGGTGTTTAAAGGAGGTGAAGAAACCCATCTGGTGGCATGGAGCGTATAAACAATATATTCATGTGATTAAGAATTGGAAAACTTGGGTTGAATTTTTCTGACCCAACCTATATAAACTTTAATGCCTGTGTTTAAATTATGGAAAGAGATACATATCAGACATTTATGCTCGTCTGGTTCTTTGGATAATCCTGACGACATAGTTTTAACAGAATGAAATTTCGCTTTTAATAAAAAGAGCGAATTCTCAAAGTCCGCTCTCTTCACTCCCTGCAG
Seq C2 exon
ATTGGAGAAAATCAAGTCTCTGGCCCAGCAGCTATCGAGGGAGGCCACTCAAATTGACAATGAAGCAGATACGTCATATCAGCATAGTCTCCGCCTTCTCAGTTCAGCAACTCAGCTTCAGGGGGTCAATGATCAGTCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000793:ENSBTAT00000061289:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTCGAGTCAGCCAATAACA
R:
TGGAAGGACTGATCATTGACCC
Band lengths:
294-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development