Special

HsaINT0090518 @ hg38

Intron Retention

Gene
Description
laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr1:183235575-183236604:+
Coord C1 exon
chr1:183235575-183235730
Coord A exon
chr1:183235731-183236459
Coord C2 exon
chr1:183236460-183236604
Length
729 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
CTCCCCACCCCCAACACCAGATT
3' ss Score
3.96
Exon sequences
Seq C1 exon
CCACGTTGAGTCAGCCAGTAACATGGAGCAACTGACAAGGGAAACTGAGGACTATTCCAAACAAGCCCTCTCACTGGTGCGCAAGGCCCTGCATGAAGGAGTCGGAAGCGGAAGCGGTAGCCCGGACGGTGCTGTGGTGCAAGGGCTTGTGGAAAA
Seq A exon
GTACGTTCCTACGGGTCCTCCCGTGGCTCATTATACCTTGGATACTCCCAGGGCAAAATGCTAACCGTACTTGAGGGGCACCATGCTAGTTGTAAAAAACATATTATTAATGATAATAAGAGGGCCGAAATCATGGGAGTTTTACTTTGGGGAAAAGCAGATATTTTTAAGACTGGAAGAAAAAAAGATTGGTTAGTCTAAATAAAATTAATGTTTTGATTGAGATTACAATACTGGGAGGTATGGTCACCCTCTGGTGTTTGAAGGGTGTGAATAAACCCATCTGATGGCATGGGGAGATATAAAAATACAGAAATATATTTCTGTTATCAAGAAGTGGGGAATTTGGGATTGAATTTTTCTGACCCAACCTGTGTAAATTAAAAGGCTTATGTTTAGTGGAGAGGGACAAGTATCTGATAAATAATTTTGTTTGGTTCTTCTGGTTATTCTAACTACATACTTTCAAGACAACAGGGTGAAATTTTGCTTTTGTTAAAAAAAAAGGGGGGGCCAGGTGTGGTGGCTCACTCTTGTAGTCCCAGCTACTTGGGAGGCTGAATTGGGAGGATTGCTTGAGCGTGGGAGGATGAGGCTATAGTGAGCTGTGATCACGCCACTGCACTCCAGCCTGGACAACAGAGTGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAGAATTCTCAAAGTCCTCTTTTTATTACCGCCCCCTCCCCACCCCCAACACCAG
Seq C2 exon
ATTGGAGAAAACCAAGTCCCTGGCCCAGCAGTTGACAAGGGAGGCCACTCAAGCGGAAATTGAAGCAGATAGGTCTTATCAGCACAGTCTCCGCCTCCTGGATTCAGTGTCTCGGCTTCAGGGAGTCAGTGATCAGTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000058085:ENST00000264144:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.717 A=NA C2=0.306
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTTGAGTCAGCCAGTAA
R:
AGGACTGATCACTGACTCCCTG
Band lengths:
296-1025
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development