BtaINT0085441 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003992 | LHX4
Description
Bos taurus LIM homeobox 4 (LHX4), mRNA. [Source:RefSeq mRNA;Acc:NM_001192785]
Coordinates
chr16:62868732-62887331:+
Coord C1 exon
chr16:62868732-62868807
Coord A exon
chr16:62868808-62887159
Coord C2 exon
chr16:62887160-62887331
Length
18352 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
TCTCTCACCTCTCTCCACAGAGA
3' ss Score
11.59
Exon sequences
Seq C1 exon
ATGATGCAGAGCGCAGCTGTCCCCGCGGAGGGGGCTGTCAAGGGGCTCCCGGAGATGCTTGGTGTGCCGATGCAAC
Seq A exon
GTAAGACACCCCCCTTTCTCGCTGATTTAATTTGGTAGCCAGACAGCCAGCAGCTTGGGCCGGTTTGGGGCGGGCCGGACGCTGCGCGTAGCCTGGACTGGAGGGGACGGGCGGGGCGAGGGGCCGACGGCCGGGGCGCAGAGGCGGTCGCAGGGCAGGGGCACCGGGCAGAGTGCGTGTGAAGGGTCTGGCCCTCGGCCCTAGGGGCCGAAAGTGAACGCCTCCGGGATAGTGCTCAAGGCGAACCGAGGGATACCGAACCCCGCATCCCCAGCCCGTGGCTTTTCTAGGAGCGTTGGGGAGAGTGTTGTTTGGGGACGCCAGGGGAACAGGCTGCAAGCCAGGCCAGAGCCCTGGGGTGGTCCCCCCAAATCACTCCCCCGGGGGGGGCGGGGAGGGCTACAGTCAAAGCTCGCAGTATCGCTAGTGCAACTTCACCCCAGCTGGCGGAAAGTTGGAGAGCGCGTCCCCCGGCCCCGGGGCTGGCGGCACAGAAGCCCAGGCCCACTCTCTGTCCCCGCGCGCAGGGTGTGCGCGCCTGGTGCGTCCCCAGCCACTGCTGCCCGCAGCGCCCGCCGCCTGCGCCGCCGAGACTGCCAGCTCCCAGTGAGGAAATCTACTCGCCATATTCTAGCAAGCCGAGGAATGAAGGGAGGGGGAGCACCAGGACGAAGTTCTGAACTCGGGGTACATCCTTGGCGCACGAGAGGGCAGGTTTCGGGATGGCTTGGACTCGGAAGGGAAGAGATTAGAGCGTAAGGGCGCTTTGCTCGCCCGCTCGCTTGTCTTTCCTGTGCCCGAAATTAGGAAGGTGGCCGAAGCTCAGAGCCTGTTTATCTTCAGGTGTGTGTGTGTGTGAGAGTACGTGTGTGCGCGCGCGCGCAGGGATTTTCCAGGTGGGAATCTGTTTCTGACCCTCACTCGCGAAGGGTGAGTCTTCGGTGGAAAATCTGTGCAGAGGCCAGAGCAGGTCCCGTGGCGTCGCGCGCGCGTGGCGGGCGCCGCGCGAGCCCTGCCCCGCGGGCTCTTAGGTTCCGCGGAACGCCTCTGGGCTTGGGAGAGAGAAGAAGGGCTTCCTCCCTCTAGTAGCCGAAGGGTTTCCGCCTGCGACTTCTTCCATGGAGCGGTAGCTACATCCTTGAGGTTTAAGTAAGGGCCGGCTCATCCACGGATGGTACCTACCTACGAACTAGGATGCACGAGCGCGCCCTCCTGCGCCCCGGCTCTCCATGACAAGGTTTCTGCCCCAGCAATACCTCAAAGGTAGGCTGGCGAGTGTTCCCCGACTCCGCGACTTCCTAAGAAGTTTGTGAGAAGGGACTAGAAGAGGATAGCTTCACTCAAGTTATTTAGGTTGTTCCTTGACTATCCTACAGTTATCTTTTGTGTCTTTTTCGGTCAGTTATTGACAATTCTAAGTCTGCGCTGTGCCTTCGAGAGTTTACTGCTAAATGTGTCTGTAGAAGGTGTTGGGGGCTCACTGACTCCTTACTCCCCTCATCCACCAAGGGCGGGGAGGGAGGGGGTTGTCAGCCCCTCGCACACACACTCACAAACCCTGTCAAATGTGCTCCGGCTTAAGCTGATTGTCACTCTGTGCAAGTGAGGGGAGCAGTGTGAGAGTGGACGAAGGTGTGTGTTTCTCGGGTCCCTTTACTGTGATTTAATAGTTGTGGTCCATAGGTGGCCTGTGTTAGGACTGCAACATAACACAGTGGGTTTCGCTCTGACAGCCTTTCTTTGGATGCCTCGCACACACTCTCAGATGGTCTCACTTTTTGTTTTTCTTACTCAGAGACAAGTTTGATTCCATCATCAGGAACTCGATTTCCTAAAATGCCTAGAACTCACCCTCAGAGCAACAGTTCGCCAGGGCTCAGCGTCTGGGTTCGAAGTGTGGAAAACTTAAGGAGGTAGAGAAGGGGACTCTCATTCCAGGGTGGTCCAGCAAGGCAAGGCTGAACCCGGAGAGGGTGGTCTGTCCTTCCTTTTGTCTTGCCCTGGTTCTGTGGCCTGGGTTGGAGGCGGCACTGGCCAAAATTGAGGGCACCAATCCCTTTGGGGATTGGGATCAGTTTTTTTTTTCTTTTGGGGATGTGTGTGGATTGTTCCCTCACCAACTGCAGCAGATCTGTCTTCTGGCTATTAAGCTGCTGGTGCTGGGAACTGGGGGTGGAGGGGAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATAGAGCACAGGTCTAGAGATCCCCCCACCTCAGTGCCTCTGGTGCCCTGGCCTCTAGGGGTATTGTAGGGGTTGGAATCCAGTTTGGTTCTGCTTTGAGGGGATGGTTTAGGCGCATTCCCTTCAGGAAAAATTACCAAGTTATGTAATTATTTCTCTCTCTTGGCGGTCCTCTTCCTTACACCCTATCCGCTCGCTCCCATACCCCCCAACCTCCCCCCCCCCCCACACACACATACTCCTTGCTCCTGGGTGGCCTGGTCTATGGCGCTCCCTGTCCCCTGCTTCACCGCTTGGAGGTTGCAGAGCAGGTCCCGGCCTTGCTCCCACAGCCCCTGGGTCACCCAATAAGGATGTGCCGGGCTCAGGCTTTCTTGGCTTTCTTCATCCCTTTGAGGGGCATAGGCCTGGGCAAGAAGCTTGGAAGAATCTGGAAGGAGAAGGCTGGGAGCAATCCAAGAGCAACTTAGGGTAGAGAAATACCCCCACCCCCCAAAGCTTGTACTGGTTGCCTGGGCAGCGCCCTCTCCCGCCTCAGGTCAGTGTTTTCTAAGGAACTCAAACCCTGGCTCCTTGCTCTGGGTGTCGGGAATGCTCTCCTGTGCAGGAGGCAACACCCTCAGGGTCACATCCAGCACCGGGCGAGTTCGTTGTTTTGTGGGTGCGGGCGGACAGGTTCAGAAAAGGACCTTGTCCTAAGTTGATGGGTCCCAGCTATTTGGCCCACGATTTAGGGTAGCTGGTTTCTGTTGTTCCTGGCACAGCCTGTCTTTGTCTGGGTGGTCCTCGCTGCGTCCCTCAGGGCTGCCAAGGTCGGAGTCCCCACAGCGCCTGACCCTGTGCAGCGCTGGGTGCAGTGACTTCTCAGCCAACTCCGAACCTCTCTTCTCCCCGAATCCAGCGGTTCCAGTCCTGCTGGTCCCTCTTGCTGGCCAAGACATTTAGGAACAACGAGGGACATGGCGGGCCTGGGGGGGTGGGGGCACGTTTTATCATCCCCTTGCCTTCGGTTTTGGCCCATCTCACAAGTAGTCTCCCGGGGCACCAAGGAAAGGAAAACGGACATCCGAGAATGTTGGCTGGAGAGCGGCCCGATCCCGCGGGAAGAAAGACTGATTAGCCCGGTCCAGACTGGGAGTGGTGAATGGGAAGCAGGCCCAGGGCGGAGGTCACCCATCTCTTACTTGTGTCCTAAGAAAATCTATCTTGGAGCTCTCGTGAACCTCGAAGCTCTCCTGAACCCCGAAGCTGTGGGCAAGGGTGTTTGGTTTTGTATTTGATAGGATCTGGGCAAAGGACGGCTCAGGACGCCTCACTAGCCTTCTTCCCTTCCGGGTGCTCCTGCGTGGGGTGAATTCTCCCTGCCCTGGTCGGGTCCGACTCCTCGCCCCCAACCTTAAACTCTTGCAGGCTATATCTTAAGGGTGGAGTAAACGCATTTCCCGGCAGGGAGTTCTCTCCAACTCTGGAAAAGCGATTTGCTCTTCTTCCCATTCCTGCCTTTTTCGTGGTTCCAAGGGAGGTAAAAAGGAAAAAGAAAAAAAATATATATATATATATATACACAAAATACAGAGAGATTGATATTTCATCAGATCCGATACAGATATTCAAACAGCAGCCCCCAACACTGCAAACCTCTTTCCCTGCGTCATAAATATATAGTCCAGCGCGGGCCAACTTTTATAGGTCAGACTGGTTGGTCCCGCTGGCAGATTTGGGCCTCGCCGGTTGGGGATCCTGCCCCCACCGTCCGGCCGGAACTGCGCACCAACCAGAGGGAATTTGGAGAAACCCGGGTGAGCGCGGCCGTGCCTCGTTAGGGGCGGCGGGGTGCCGCGGCGCCCGAGGGGCTCGCTTCTCGGGCCTCCTCGGTTCCCATGCCTACATCGGAGAGGGCGGAGGGGAGCCCGCCTGGGAAGCCGCAGTCTCGGGGCGCTCAGGGAGATGAATTAACGATTTAACCCAGACAGAGAGCAGGCAGGTCGGGCAAGTGAGGGTCGAAGGTCTGCACTGAGCAGCCCCAAGTCCGCGTCCGGGGAAGAAGAGAAATCCCGGCTGAGAAGAGGAGGCAGGACCTAACTCGAGTGGTTTCCTCGCTTGGCCGCGATCCATCCTCGCGGAAAAACAGAGCCAGGAGGGGCCAGGCGGGAGCGGCGTCCTTGGGTCTGGGAGCACGACCTGGGTGACCTCGCCGCCACCGGGGCAGAGCGCCTCTGCCCCCAGGGCAGGCGCCGGCCTGGGTGGCCCGGGGGAACCGAAGATGAATTGCTTCCAAAAGCGATTGCCTCGCACCTGCGGGCGGTGCACCGTCCGGAGCGAGCCCGCCGCGTGCCCTGGGTTTTTGAGGGTTCGCCTGGGGGGCAGGTGCGGACAGGGCGGCCCTTCCCGGGGAGCCAGCTTCGCCAGCACCGCGTCCACCCGCTCCAAGTGGAGGTCGCAGCTGCGAAGGGGGCAAAAGAGGGGGCGCATTCGGCACCGCGCGGCGCATTCGGCATTTCTGCGCCTTGGCCCTTTCCCTCCGTCCACCTTCCTCGTCCACCTTCCTCTTCCTAGTTTATTATCCCGTTTAGTCTGGGATTGGCCAAGCCTGGAACCAGTTTCCTACTTGTTTGGAGCCGGGCAGACTTTTCTCGCCAGGAGCGCGGACGGAGCGCGGGAACTATAAACCCTCTTCTTCCGCATACCCATTTCGCACCAAGAATTTGGGAAAACCTTGTTCACCCCCCTCCCCCCCGCCACGCGGGCGGCACAAGTCTTTCCGTGAATTTTTAACCCTTAGAAAGCGATTCTCACATTTTGGGAGCAGTTCCTCCAGCACAGAACCTGGAGGCAGCCGGCGGGTCCCTGCGCCGCGCGCCCCTTTCCCGCGTCGCGCGCCCCCTTCCCGCGTTCCCCTCTGGGCTCCTGGCCCTGATCCCCGCGCTTAGCGGACCTGGAAGAGCGCTCGAAACGTGGCAGGCTCAAGAGAGACGAGGTCTGTACCTGGACAGCTGTTGTTGTAAATTAAATTCGACCTGGGCAGGGACTTAGTAACACTGTGCGCCCAGGAAAGAAATGGAGCGGGCTGTACCCAGTGTCCTACAGAGGAAGGCGCGGCTGGGACTCAGCGCAGGCTTCATTCACCCTTTGGGGCTCAGAGGTTGGTTTCATCAAGGATGGGATTTTTTTTTTTTTTTTTTTTTTAAGGCAGGGTGAATGTCTTTTAAAGGAATCTGAAGGATGAAACTAGTCAAGAAGAATTACTAGCAAAGCCCGGGCGAGATGAAACCAGGAGCGGCAGGAAGTTAAATGAAGGAATACCAAAGAGAGGTGTACCTCCCTCCCGACTCGCCAAAAACAAAGCGGGGTTAAGGCAAGAATGTAGGCTGAACGCCCCGGGATTAGAGTAGAGTCTTCAAGTAGAGTCGAGTCTTCAAGACTTCTAGGAGGGGCAACCTACGCGACCAAATACCAGGGTCGATTTTACAAAATCGAGTCCTCCTGGAGGTGAGGTGGGGTAGGGTGGGGTCGAGGGGTCGAAGCAGGAGGGAAACCGGCGTAGGAGTGGCTTTCCATTGAGTAGACAGAGCACAGCCCACAGGGGCGTCTTGGATTTTGAACAGTGACCTGATGACCCCGCTGACCAGGTGTAGACAGCCTCAAGTCCTAAATATTTCCATTGTCCTAACACTTCCCTTTTGCCACGGATTTTAGAGTCCTTTCACTCTGTGCTCCAGTCAATTAGTGATTACTTTAGCACCGCATTAGCAGACAGAACCCAGAGAGACTCAGGTGCTGGGAGGGCTGCAGTGGAGGAAAGGGAGGGAGACAGCCACACCTGCAGTCATCCAGGGATGGGAAATTAGTTAACAGGCACTCACCTTTCTTTCTATCACATTGTTAAGAGGTCTCCTTTGAGCCTCTTGATTTAGTCTGTACCGGTGGGTATCTTGTGAGTTTCTCAGGGAAACTAGTCTTCTCCTAATTAAGGAGTTGTGGAGCGGGGAGGTGGGTGGAGTTGGATGGAGGGATCTTGTGCCATTTCTTTCAATCAGGGAAATAGATCAGGATTGGGGCTGAGAAGCTTTGGAATGCAGAGAGACTTGGAAACAGTTTAGTTGCTGAGCAGCCGGTGGAAAGGAGTAATCTTATCCACTTTGGGAAACCCAAGGCTGGAGACAGACTGAAACAGCCGTTTGCTATGGCGCACCAGATACCTTACTGTATAGATGGCTGAGTTTGGAGATGGATGGTGTGTGCAGGGGGTTCGTTTTGTAATGGTTTTCTGCCTTTCCTCCCCTTCTGGAACGAGTGTTAACAATGCCCATAACACAGATGTGAGCCAACAGGGTCTACTGCTTTTAGGAAAATGTCATCATGGCTTGAATGTCTGTCTTCCTTGTCTGTCTCTCTTTCCTTTCTCCCTTCCTTCCTCCTTTTGTGAGATCCTTGCGGGAGGAGCATGGGTTTGCACAGGATTTCTGACCAGCGGGATCTCATCAAGGGTTGAGTGCCTAGCAGGCTGTGGGGAGGTAGATCCATCCATCTCTCACGCAGTTTCCAGGAGGCTTGGGGTGGGGGAGGAGAGCAATTTCTGGATCTGGAACAGAAACGATCCCAGAGCGGGGCTACTGTTGTTTGTGATAGGAAGAAAAACTCACATGCCCCCTGTGAGGTCTTTACCTTTTTAAGGTCTCAATTTTATAGGAACCTCCATCAAAATGGAGCACAAATGAGCCATTTTGAGGCGCTGCAGCTGAGGGTAGGAAGAGAGGTTTAACTGGCAAAATTGAAATGGATTCTTCCTTGGAAAATGTACTTTGGGTTCGTGGCGGGCTGGAAAAATAGTCTCAGGAGGCAACTAGTAACTCCTATTGTTTTTTGGCAGATTTCTTTTCTCTGATCCCCACTCCCCTTCCCTCTGCCAATCTAGGTCTAGTCACAGATGTTTTACTGTGGTATCTCACCCCCAAATGCCTTTAAAGTATAATTGGCTTTAATTATAATGTTAGGGGGTTAAGGGATTGGTTCTGGGAACAGCTTAATAGAGACAAAACTTGCAGCCAAATTAATTGAAAGTTTCTTCTTATGAAGGAGCAGTTGCCAAACATATGGAATATTGCCACAGAATGAGACATCAGAAAAATGCATTGTGGAGATTCAGCAATGATTAAATGTGAAGAATGGAATAGAAATAGATGTCTGTGGCAGTTCCATAGACTGTCATGGATTCGTTTAATGTGATTTTTCAGTTTTATTTGCAATTATTGAGAATAGTCAATACTCAACAGAAGATTACTAATTCTGTGTCAATGTATAACCTAGGAGATAATTCTACACCTGCAAAATATATGTCTACATTTCTTATTTTATTTACTATGGGATGCCTTCTTTTAAAGGGTTGTCCAGATTCAGCCTTAAATGGTAACATCAAAATTGTCTCAAGGCTACTTTTGAATTTGATCTTTCATCGAAGAGGTTACTATTTTTGAGCTAAGCAGAAGAACAAAAGAGATTTTCAAAGGGACCTCAAACCACCAAATGAAACAAATAGGATCTGTGGTGGGAAGGATTCTAGGGAAGAACAGGGGGAGAAGACGACGTAAGGTGTGATAATTTCTGATTCTCTGACTCTTTTCTAGTTGTTAGTCATTTGTCAAGACAAACTAGAAATTAGATAAGATGTGTGTAGATTGCTGTATTTTTGAAGTACATCAGCAAACAGGATTATATTAGAGAATATAATTTACCTTAAATGTGATGCCAGGTTTTGTTTTGTTTTTTACTTATCTCAATATTTTTGTGGCTGGCCCAGATCCTTATAGACAATGCTGTCATCACATAATAACACAATGTTCAATAAACTTTTTATTCTTAAATTTTTAAAGAACTAATATTGGAATTTTGTGCTTCTACTGTGCTGTTTAAGATTATTCTTACTAGGTTATTAAGAGAAAGTTTATGAGAAACATTTTTGAAAATTATGTTTGGTCTCTTGAAGATGCTTTGGTTTAGAATAAGGGAACATATAAATAAGGATGCTCTAAGTTCAGTTCAGTCGCTCAGTCATGTCTGGCAAAGCATTTCAGTATTCTTACTGAGAATCATGAACTCCTTGTTGCCATAGAATAAGGGAACATATAAATATGCTCTAAACTGTTCAATAAAAGTGAATTGTCTTTAATAGGGAAATAATAAAGAGCCAGGAGGGGGTAGAAAACAGACACATCTAGTTCTGATTTGTCATATAAACTGCATCCTGTGTCTCAGTTCTCTGTTCCTTTGGTCACAGTTATCAGGTGATTTGAAAGGGGAGTTATGACCAGAAAACAAGGTTTTATTGTCAGTAGGGATGGCAGCGACTTTGAAAAGTTTTATTTAAGAAATAGGTATTGAATAACAGAACTTTCAATTAGTTTAACTGTACCTCTGTTATAATTCTGAGACTTGGATATTCCAGAACTTAGGTTTGCATTTAGGCAGGTCTGGTGCCATACTTGCTATGTCCTGTGGCCTTCTGTTAGCAACACTTGAGAATTAATCATTCCCAGATGAAACGAATAAGCCCCCACTGAGAATATTTCCCCAGCCTGCCTTTTCAAAACCTCCTTCTTTCTTTCTTAAAGAACTTTAGGTAACAGAGCGACATTGTCTGCCATTAAGTGCTGTTTTCTCCCTCTTCTATGTTGGGAAGGAATCGAGAATTCCAAGAAAAACATTTGCATAATATTTCAATTATATATGTGTTTCCTTAAAGCCCCATTTGGCTTTTCTCCTTTCAGTTTGAAGTCAGTTTAAAAAAAAAAAAAGGCAAATAAAATTAAGTATTTTGGGAAACATACAGTAGCCAAATGTTATTTAACACAGAGTTCAAAACGAAAACTACTTACCAGCAAAAGAATTTGAGGTGAAACCCACCAGACAGAGGTGCTTTGGTGAGCATTGTTGGCAGCCTTGGTCTTCAATCAGTCTCAGAATCTATCACAGAGAAAAAGAAGATTCTAGCCCTGGTTTGCTCCCCAGTTGTGTACCCTTAGGGAAGCCCTTTTAAATGTAGAGGTTCACTTTTCTCAAGATCTCAAGGAAGAGTAAATGAGCTTACAGATTTGCAAGTTCTTGACAAAATTCATAGTGTGGGCAAACTTAAAGACCACAATCATGATCACGGTTCCTGTTTTGGGGATGGAGTTGCCCTAAGTGGGCTGGAGGGCTCCTGGGTTTCCCGAGAGGATGGCCAAGACAGTAGGGAGCACTGAAGGGGTCTCCAAACAGGAAAGAAACCCTGGAAGCAGGTCCCAGGGACCAGCTCCCTATCCAGAAAGAAGCAAGGAAAACCTTTTCCTGGGCATAAGGCTGTCAAGTCAAATGGTTTGTGAAACAAAAAGAATTTTATTGTCCAAAAAGCAGTGATAAAGCAGTGTCTTGCAGGATTCCAAAGTGGCCCATGAAAGTCCAAATTTTACAAAATATTAATCTGTTCTGAGACTGTAATTAAATGAACATTATTCCAACCAGTACAAAATACCTGTCTTTAAAATATTAAAGTATTCACCAGCATTATGGGTCCAATGGAAATATCTGAAATTCTAAATCATTTTCCCAGAAAGATAAACTTTCTCAAATACACTTTAGAAATCCTTGTCAAGTGCGTTGGTTCTAGTTTTAGTCTCCTTAGTGAGAAAAAAATTGTTTTTCCTCACCTTGTTGATCTTCTGTGACCAAAGAGATGGAAAGCACAATTTTTCAAAGAATTAAAATCGATTAAACAAACACAAACAGTCTCTGAAATGTTTCAAGGTGGCCCCAGGTTCCTTGAGAGCAGTTTCTTGGAAATGAAGAAACGTGAGTGGGGAATAAAAATACACAGTACTTATTATACATACCAGAGGGGTGTGGGCAATTTGATCTGCTGCAGACCGTATTAGACCTTTGATCTCTTCCACTTCCCACCTTTCTGAAACTTCTCAAATGGAGGAATTTGGGGATTTAAAACAGAATCCATTGTCTGTGGGCCACTCTGAAAAATAAGCCCCATGTGCACTTCAGGTGATTTGAGGGCTGAGCATCACGTTGTGGCTTTTATGAAAGCTTATAAGCTTCCTTGATGAAGAAGTAGGTTCCAGCTATAGGCAAAGGGTTTTTAGTTATATCTTACCAAACAAGAAATAGTCACTTCACCATTGGGCATTTAGATGTCTCCAAGGAAAATAGGAGAAGCCTCAAATGTTAATTTGAACTCAATCCACTCTTACCTGGATACATTACAGCAGAAGGTCAGGCAGTTTGTGGTCCCAACTACCCCACTCTCAGCACTCACATGTGAAGAGGGGGACCAAGGTCTGGCAAATTTGCCCTCATTCTGTGGAGGAAAAAATCTGACAGATTTCTTTATTCCAAAAAGACTGAATCTTGTAATGTTGCATTATCTGCTGTTCATACTCTGGGATTATGTTGATTAGAAAGGGTTGTACATTTTCCAGATGCTTTAGAACAAGGGGGGTGAAGGAGAGTTTTGAGTGTTTTGGTGGTGAGGGTAGGGAAAATTATATTGGGAAATAATGAAGCATGAAATAATTTTGATACGCTTTAAATGTATAAATCCATCTTGTTGGTGACCGGCTATGAGAAGGGAGAAGGAAGCTGACCACTGAGCTTGGACAAAGGTATTATGGAAGTAAGTGTTTTATACTCATTAACTGACGCAGTCACGTAGCAACCCTGAGAAAATGATGTTATTATCTCCATTTTACAGATAAGAAAGTTGAGGCTTCAAGAGATTCTACCATGTGTGTGATTGTCCATGTGTGTGATTGTCCAAAATCACACACGTGGTAGAATCAGCATCTCATTATCGTAAATAATTTGGAAGACCTAAAGATTTGAAGATCTGAACTCTAACCAGAACTGAAAATTTTCAAATTCCCTAAGTAGTTTTCCAAAAAGGTCTTTGAGCAAAATTTTCTACCTCTCCCTAGCTTTCCATTTCACTCACTATCCATTCACCCTACCTCTCCAGGGTTGGACAGCTCCCTCATCCAGAGATGGTTTCCTTTCTGTAGATACAGCTTGACTTCAGAAGAATTGGCATTTTCCCAGAGTCACCACGCCTTAGCTGTTGTATCCAGATATGCGTGTGCATGTGTTTGTGTGTCTTTAGGAGTGTGCGTTAGAATCTGTGGCATGTGTGTGTGTACCTATGAATAAATGTATGTGTATATGCTAAATGTTTGAGTATACGTGAATGTGTGTGTGTGTGTCAGTGAATGTGGTATGTGTGGGTGCCTTTGTCTATGTATGAGTGTGTATGCTTAGTGAACATTAGTGATTGTGTGTTTCTCTGTGTGTCTGAGTATATATGGGAGTGTGTCTGTGTTAAGTATGTCTTTGTATATACTGCAAGTGTGACTATGTGGGTACATCTGACTATGTGTATGTGTCTGAGTGTGTGTAAGGGCATCTGCTTGGGTAGTTGTGTACATGCAACTGTTCTCCCTGCAGACCTAGGTCTGTGCCTTGGGTTGTGTCTCTCTGCTGGACTCTGGTGGACGGCCCCATGATGGGAGGGTGTTGTCCCACGTGGTCCAGCATGTCCACAGATTCCTTGGCTGCTCCAGGAGTGTTGCTGTCTTTTCATGCCTGGGTTTACCCTCTACAGAGCCCCAGCAGAGAGTATCACCACAGAACACTTTCCTGCAGATAAGATAAAAATTTTCATTTTAAATGAAATGACTCCTCAGATCAGGAACTGAGTTTATAGATCAGATTCTGTCTTAGTGACTGCAGAAGTCTGCTTAAACTCCAGTTTTCAAGGTAAAATCTTGCCGTATCAAATACTGCATGGATAAGTCAAGTTTACTAGGGACTTGGAAATCCTCTCACACCTTGGAAATTTTGGTTATGACTTTATTTCTTGTAGGAGACCTATATAAGCTCTGTCCTGTTCAGACTCTTCAAATTATGGGGAAAAAAATAGTTTATTGTAGGTTAAAAAAAGATTTGTGTTGTTGCTCTTTGAAATTTTCTGATAAACATTTCACATGCATCTGAATAATTGCCTGGAGCTCTGTCTCCTGAAGTGTGGGGTCTGAGGTCACAGGTCCTCACCCCCATCACAGGTGGGGATGAATCTGAACTTGAATAAATGAATCAACAAGCTGGCACCTTGCAGCTGGGGGGAGGGGATCAGCCGGACAGGGGTTCCCACTCCCAGCCCTGCTTGGGCATTAGGTGTCTGTCCCCTAAAACACCTGCGTGCTCTGTCCGAAGGAGGGAGAGCTGTCCCTCAGACAATTCTGTCTGCACAATTGTTAGGGAGCACCAGAGGCTGTTGGCTTATCAACTCCTCGTCACTGACACAGAGCAGCTTAGAGACTATTCCTCCACCTCCATCTCCCCTCCGTATGTGACACGTGACCCAGTAGAGCTAGCTGGGTGAGGTGATGTCTGACCTTCTAGCTCTGGGGTTGGGTGAGCCCACCCCATGACAGGCTTAGTTCAAATCCTGGTTGCCCCGTTGGGGGACCTCTGACATTTTGCTTGACCTCTCCCAGACTCAGTTTCCTCATCTGTAAACTGGGGATAATAATATTCCTACACCAAGTTGTGTGGATTGAGGAAACCTATGCGCAGGGCCTGGCATAGTTTATAACAGGTTCTTGTTGCCTGGTTTTACCTTTATTATTGATATACAGTGGATCTCTTAAAACCATTTCTGCATTATTTTTGTTTTTTTTAAATGCTCTGTCTCTCAAAATCTGCAGTGGAATACAGTGGGAAAGGTTTTGTTTTCTTTTAACTTAAAAAGCACCCTTAGTATATCCTTTACCTTTTTGCCAAGCTTGAGGACGCCAGCTGGGTTCCAAGGCCTCAACCCCAAGTTTGGGAAGCCCAGCCTGATCCCTCCGGAAGCACTCCCTGCAGGCTGGAGGTCGAGAGAAATGGCTCATCTGCCTGCTTTTAGTGTTGTTCCTAGACATGCTGTTGTCTCGGCTTCCAACCCTCTAAACCCCCCACCCCTGCCCGCCCTTCCTGCATACATTAGCCTTAATGTATTCTCCCTTGAATACTCATCATATTAAGGCTCCCGGTAGATACCTTGCTTGAAATAAATTTTATGGGCACGCATCCTCGCCCTCATCTCCATGCATTTGTGGCCTGGAGGAGAAATATAGCTGTATCTTTCCTTGGAGGCCAAACAACAATTAGGTGGGAATGGGCAGCCCTCTGGCCTGGGTGCAAGGCAGGGTGTGGGGAGGGAGCGGGCTTGCTCTCCGTTCCCCTATCGGTCTTTCCCAGCTTAATTTGCCTCTGCTGGCCTGCAACCTGGCTCCTGGGACAAAGACGTCCCTAGTTGGTTTTTTCCGGGCTGATGATCCACGAAGACCCACAGGTCGGACCAGGCACCCCGCGGCTCAGTGGGGCATGGGTTCCTTTGGCTCTGCACCGCACCTCCAGGCTCACCTCTTCGCTGAGCCGGAGGGCTTCTCCCCTAGGGCTTCCTTCCCATCCTTTGCATAAAGATGCCTGAGCAGACTTCCTTCACAGCTCTTTCCGTAAAACTCAGTAGCTGCCACCAGAGCGCCTGCAAGGGAGATCCACACCCTTTTCCTCTTAATGGCTCCATTTACCTGCCTATCCCCATCCCTTTCCCAGGCTGGACTTGTCACACCAAGGGAGCTCCAGGTTACCCGCCCCTTACTTACTATAGCTTCGTCTCTTCTTTCCCAACCTCCCAACTGGTAAGGCCCCTGCCCTCAGAACCCTCCCTGGCAGCTCCAGGGATGTGGCCCTTGGTGGTTCCTGAAGAGTCAAGCGTGTGGTTGAACAGGAACCTGCCTGGAGGTGCCTGATGAGTCCCCAAGCCATGGCACAGCTGCTGTGTGCTGTGGGTCCACTCTGAACCTCCGCATGAGGGTCTTGACATCTATGCGGGACTTCTTGGTGGGAGTTCAATGAGATCAAGCTCAGAAACTTGGGCCCCTAACTTTCCTTACTCAGCCCAGTGGCACCACTGCAAATACCCGGTTACTGCAGTTATCTTACCTCCTAATGATAGAGACCTTTACTGAACACCTACTAAATACCAAGTCCTTGTCCTGTATACTGAGTCCTGTTTGGCCTCCAGCCAAAGTGTTGTGAAGATGAATTGATTAATATATCTTCACAACACTTCTACCAGATTCAATTGTCATCATCACTCCATTTTACAGGCGAGGAAACTGAGGCAGAGGCAGAGTATTGGGTTGGCCATAAAAGTTCGTTTGGGTTTTTCTGTAAGATGGTTTGGAAAAATCCAAATGAACTTTCTGACCAACCCAATGATTTGTTAAAGCTTAGAAAGCAGAATCAAAATTGGGCAGACTGGCTCCAGAATCCACGGTCTTAACCTGTGTCCTATCTTGCCGCTCTTATTCAATGGAAATTCCTGTAGCTGTCCTGTGCTTAGCCCTTTGCTGGGACTCCTTGGTAAATACTTACTGGTCGAACAGTTTCTTTGTCAAGGAGGAGAGCTTTTGAGATAAAAAGAAAATCCCATCTGAACTGGGACCGGTAGTGAGTGTCCAAGCCTACATGTACCAGGGAGTTTTCATTTTGGTCTGAGAATCCGGTCAAAGGGCAAGGCATCTAGTGAGTCTGACCTTCAGGCAATGGTGGTGCCTGCTGAGGCCATGAAGGGAACAGACTGTGTTGGGGTTCAGTTGGGTTTAAGATCAGCACTGTGTGTACAGGGCTAACAATGATGGTTAGTGAATGTCTCCATAGCCTGTCTGTGTTTTAGATATAAATGACTTAATACTTGAGAAAGCTTTCTCTTTACATAGGTTTGCTGCTGCTGCTGCTAAGTCGCTTCAGTTGTGTCCGACTCTGTGCAACCCCATAGTCGGCAGCCCACCAGGCTCCGCCGTCCCTGGGACTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGTGTGAAAGTTAAATGTGAAAGTGAAGTCCCTCAGTCTTGTCTGACTCTTAGTGACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTGCTCTGTTACATAGGTTTGAATGTGTTCAGTTTTTCCCCTTAATGCTTTGAGGCTAATGCTCTTATGTGAACACTTTAAAATCACAAGTCTTGATAGCCTGTCTATGTTTTAGATATGAATGACATAATACTTGCGAAAGCTTTCTCTTCACGTAGGTTAGATGTGTTCAGTTTTTCCCCTTAATGCTTTGAGGCTAATACTCTTATGTGAACACTTTAAAATCACAAGAGATTTAGTTTTACTACTTTTGTTGACATTTTGGGATGTGCAGGAAAAACTAGTGAAGAACTGTCTCCAGGTGAGCTTCTTAGGAATTTTTTCTTTTTGTAAATTTAAACATATATATTAAAAATTTTTACATTGTTGTGTTGGTTTCTGCCATACAACCATGCAAACCAGCCATAAATATACATACATACCCTCCTTAACCTCCCTCCCTGTGATACATATATACTATGGAATATTACTCAGCCATAAAAAAGAATGCATTTGAGTCCATTGAGGACTAGTGAGGTGGATGAACCTAGAGCCTGTTACAGAGAGTGAAGTAAGTCAGAGAAAAACAAATATCATGTATTAATGCATATATATGGACTCTAGAAAAATGGTTTTGATGAGCCTATTAGGAAGCAGATACAGAGAAAGAACTTGTGGACACACTGGGGGAAGGAGAGGGTGGGACGAATGGAGAAAGTAACATCAACATATATACTGTATCAGGTGGAAGATGGGCAATTGGTGAGAAGTTGCTGTATCGCTCAGGAGCCCAGCCTGGCATTCTGTGATGACTTAGAGAGGATTTGCTCAGTAATTTATTTGGTGATAAATATCTTTGGAGGTACTCTTGTGTGCCTGACACTGTGCTAGGCATGGAGGAGACACAACTGAGAAAGAAATGCTGCTCCTGCTCTTAAGGATTCCGCCTTTTAATGGGAAAGATAGTGTGTAAAAAGACAAGTAGCAAAAAATGCTATAATAGAGGTAAGAAACCCCAGGGTTTGCCAGCCTTGTGACCTGCTGTGTTATGAGACTACCATGGGAGGCCAAATGCTTGCCCATTTATGTTTTTGTTCTTAACATTTGTTACAGTCCTTTTTTTGAGGAAAAGGACAAGGGAAAATGGCTAGAGATGTTTACACTATTTGTTCATCCAACTGTGAAAGCCTGACCATTTTATACATTTTGAAACTAATTCAGTGACTCAAAAATACTATCAATCCCCTGAGCAATCCCTTGGTAGAGATGGGATGGCAGAGAAATAGACCTTGGCTAGGAAGTCACCCAACCCAGGAACAGGATGGGGCAGTGGTTAGGATTCAGTTGCAGACAACAGAGTCCGTTTTCACTATTTAAATGGAAAGTGGTCAATTACCAGGTATGTATTAGATGACTTTCAGGTTAGTGGAGCCAGCCCTGGAGCAAGCTTCTGGGAATAACTCCCAGTCCCCAGAATGGTGTTGCTTCTGCCATGATTGATTAGGACATTAAAACCAGAGAATCCTGTGGCCTCTGCCATGCTCCACATGAGCATAATGGGGGCCTGCCTCTTGGCTGTGCCTCCATTCTACTCAATTCTGAATTCTGGTCTCTCCTTAGTGCATCTGATTGGCAGACTCTAAATCACATTTGGAACCTGAGCTGCAAGGGAGTCTGGAAAAGCAGAGTCTAGTTTTCCTGTCTGAGGTACTACACGAAGTCATATTCACTGGGGATATTAATTGATGGTATCTTTTGTAGTTCATTAAAATACTGAGATTCTTTCTCCTCTTGGACCTTTAGGCATGGACCTTGGTCACTACCCCTCTCCCCTACATATCATTTTCTGTTTAGGCCAGATGGCCTCTCAGTCCATGCCTAGGCAGGGCTCACTTTAGAGGTTTTAGCACAGATTCTACCCAGTAGTGAAAGTGTCATGGGCTTCCCTGGTGGCTCAGATGGTAGAGGATCTGCCTGCAATGCAGGAGACCTGGGTTCAATTCCTGGGTTGGGAAGATCCCCTGGAAGAGGGCATGCAACTCACTCCAGTAGTCTTGCCTGGAGAATTCCATGGACAGAGGAACCTGATGGGCTGCAGTCTATGGGGTCTCAAAGAGTCAGACATGACTGAGTGACTAAGCACAGCACAGTGAAAATGTCATAGAAATAAAAGTGAATGTAATTGGGTCTTCCTGGCCACTGGCTGCTGAACTGCAGCTGGCATAAGTGGAGTTAGCTGATGCTGCTAGCCTTGTGGTGCTCTCAGAAACAGGCCCTTTGGGCCAAAGCCACCCAAAGCCAGGCCAGCAAAACATGGATTGGATTTCAATCCCAACCTACTCCTTTGGCCAGGCGTCTTTGCACAGTGTACAACCTGCACAACTGTATGTGGCAGCTGTGGGAGTTTGGTTTATGTTCTTTCCCAGATCAGGCAGAATGAGAAGGCATCCACACAGCACCTGGTCCAGTTAGCAGTGCTCTGCTGAAGGCTCACACGGCTCTCTCACCTCTCTCCACAG
Seq C2 exon
AGATCCCCCAGTGTGCTGGCTGCAACCAACATATCCTGGACAAGTTTATCCTCAAGGTCCTAGACAGACACTGGCACAGCTCCTGTCTCAAGTGTGCAGACTGCCAGATGCAGCTGGCTGACCGGTGCTTTTCCAGGGCTGGCAGCGTCTACTGCAAGGAAGACTTCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003992:ENSBTAT00000005216:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0041217=LIM=PU(94.6=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development