MmuINT0090896 @ mm10
Intron Retention
Gene
ENSMUSG00000026468 | Lhx4
Description
LIM homeobox protein 4 [Source:MGI Symbol;Acc:MGI:101776]
Coordinates
chr1:155724790-155742027:-
Coord C1 exon
chr1:155741802-155742027
Coord A exon
chr1:155724962-155741801
Coord C2 exon
chr1:155724790-155724961
Length
16840 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
CCTCTCTCTCCCCTCTGCAGAGA
3' ss Score
11.68
Exon sequences
Seq C1 exon
GTCCTCCCGGAGACGCGGAGGGCTCGGTTTCCTCTGTGACTTCAGCGGCCTGGTTGGTTTTATTATTATTATTTTCAAATTTCCGAATCCAGCCAGAGGGAGAGAGCGAGAGATCTCGGTAGACTGCGACTTGCTGCCTCTGGCTCCAAGATGATGCAGAGCGCGGCTGTCCCCGCGGAGGGGGCTGTCAAGGGGCTCCCGGAGATGCTCGGTGTGCCGATGCAAC
Seq A exon
GTAAGACACCCTCCTTTCTCGCTAATTTAATTTGATAACAAGACAGCTAACAGCCTCAGCGGGTGCGGGGAGGCCGGACGCGCCGTTCAAGGCACTGACCGGGAGGGGTCGGGGTGCAGAGGCGGTCACAGAGCTGGGGTACTACCAGTCAGTGTTTGAAGGGCTTGACTCTTGGCAATTTGGGATCGAATTCGAAAGATTCCGGGATACTGTTCGTGGAGGGCCCAAGGGTATAGAAAGTAGCATCTTTGGGCCGTCGCTTTTATGAGAACCCTAGGGAGGATGCTGTTTGGGGACAACAGAGGTTTCCAGCTACAGGCCAGGCCCGAGGGCAAAAGTGGTCCCCCAATTGATTACCTTTCGCGGCAATGGCCAAAGCTCGCAGAACCGCTGGTACAACTTTACCCCAGCTGGCGGGAAGTTGGAGAGCGCGTCCCGGGTCGCAGGGCTGTACAGAAGCCCCCTGTCACACTCTTGGTTTCGGCAGTTCGAGCACTTGATTGAGTCCCCAGTCACTGCTGCCCGGGGCACCCGCCGCCTGTGTTGCCGCCAGCAGACTGCTCCGGGTGAGCGAATGCACTCGCCACATTCCAGCTAGCCGAGGAATGCAGCGGCGAGAAGCTCTGGAACGAAGTTGTGCGTGCAGCCTTTGCTTAGGCGAGGGTAGGCAATCTTAGTGGCGCGGGGCTGGAAGAGGGAGAGAGACTCAGACGTGTGGGCACTTTGCTAGCTCTCTCAATTTCTTCCAGAGCCTGCAATTAGTTACGGCAGGTCTCTCACCCCAGGTTTCTGGTTTGTACGGATGTGCACACACGGCAGAGATTTTCCGGGTGGGAATCTGTCTGTGTTTCCGACTCCTGAACAGATAGAAGCAATCTGTGCAGAGACCCGAACAGGTTCTCAGGCTTAGCGCGCGCTTGCGGGCTCCTGGTTAAGTCTGGGTTTACAAACGGCTGCACTGGGCTAGGTGCCCCTGGGTACCCTAGAGAGATGAAGGGTTCCCTCGATGGGCTTGCCAAGAGACTACACTTCCGCTTACGACTGCTTTAGTGATGCGGTAGGAGTTTATTGTAAGTAAGAGCAGGCTCACCCAGGGATGGAGACTACCTACGATCCCCGGCGCAGCAGCGCGCCCTCCTGCGCCCTGCCTCTCCATCGCAGGGGTTCTGTAACACAAATCTCAGGGCGGGCTGTCCAGCCAATGTCTTGAGATTTATTGTAAAGTTTTTGAGAGAAAAATGGAAGAGATAGCTTCATTTGAGCCTGTTTTAGATTGTTCCTCCGCTGTAGCCTACAGTTCTTGTGTCGCCTGTTGGCGAACAGTTGCAAAGTTCGCTGCGCCTTGGAGAATTGACTGTCAGCGTATTCTGTAAGCAGTGTTGGTAATTGCTTCCAACAGCTTGTTGATTCTCATCTCCTAAACAAACAGAAAAGCAAACCCTTTCTAAGGTACCCACGTTCTTAAACTACTTGTAGCTATGCTGCACTCATAAGGGCGGTCTGTGAATGGATAAAGGATGTGGGGGTCTGACTCAATCCTCCTTAAGTACCTGTATTCTAATGACTTCCTCCACAGATGTCCTGTCCGGATTCTGGACTCTCCTCTGACGGTACTTTTTTTTTTTTTTTGTCATATACAAAATTCACATTGTCTTGATTTTTGTGTCTTTTGCTCAGGGATACTGAATGTCAGGAACTCGCTTTGCTAAAAAGACATGGAAATCATTTTAGCTTCATACATGTCTCCAAAGGCTGAGTCTGGACCCATACTGCAGAAAACTTAAGGAGGCGAAGAAAACTCTGGGCAGAGAGGGAGAAAAGGAGTGAGGGAGGGTTTGAGGGAGGGAGGGAAAGAGAGAGCCCACTTACTCGAGTGGTTCCCAAGGGCAAAGCCAACCAAGAAAGGGCATCAGCCTTTCCTTTTGTCTTTCTTGGGTTCTGTGGAAGAAAGAGGAGGTAGGTTGGAGGAGGCACCAGTCAAGACCGAAGGGTCCAATCCTGGAAGAGTTCACGAGTCTTTCTCCTTCCCCTCACAAGCATATCTACCCACCAGCTTTACCCTGTGACTGGGGGACAAGTTTGGAATGGTTCCTTCTCTCAATTTACATTAATCTCCTCTTTCCTGATGGTAGGGAGGGCTTAATTATCTAAGAACCATGCAGGAAGAGTATGGGGTCCACACTTGGGCATGGAGGAGAAATAGGGGTAACCCTAAGGCTGTGATCTCTCTCAGCCCCTAGAAAAGATATAGCACAGAGAGACTCTTTCAAGGGAGATGAACTCTCCAGTGGGCCAAGCAAGTTTGGGTTAACCCCTTTCTCACAGATGCTCTCTGTATTTCCATCTCTCAGAACCACCTTGAAGAGTACTTGACAGTAGTATATGGATCCCTAACCTAGGCACCCCTGATGCCCTAGATTGTAGGGACTTTTAAAAAAGGATTTTAAATCCAAGGGGTTTGGGGAAGGAGGGGAGAAATGAAAAAAAACACCCTGCCTGTTTGGGGACTGGTAAAAAACACAATCCTCGGGGAACTGTCTCCACTGGTGTAACTTTGCTCCCTCCAGTATCTGCCCACAACACTATAGCTCTTATGTGCTGCTAGGCCACAGGCTGGTCCTGAGGTTGGATTCTCTTTGCGCAGTGGCAACCTTTATGCTTCACCCCTCAGAGGTCCCTGCCTGGCTTCACAGCTCAAATGGCCTCGAGCAGGACGCAGACAGCGGTCTTCTCTGATAAACTCCACTTCTTCAGGCAAGGCAACCTGGGGTGGAGAAGAAGGATCCCCTTGCTTAGGTCTCCCATTCGTCCCCTGTTCTCCCTTCTGGCCAGTGTTTTCTAAGGAACTTCAAACCACCGCTTCTTAAGGCAGGTGGCCCTCGTGTTCCTTTGATGACACACACGAGGTTCATTTTGGGAGAGCTCGATGTAGGTGTCTTTCTGGGGGCGGTATGGATGGGTTGGGGACTGCAGGTGAGTGAATCCTCCCAGCACCTGCCCCTCAGTCCCCACTGCCGCCGAGCATCTGGATACCGCCGGCCTGGCCCCTCTCCCTCACTAAAAGACATTTAGAAAAGTCAGATGAATAGGAAGGTGGGAGCATTGTCTACCCTTTGCCCTGTGTTTGAAGCCATCTTCACTGGTATTCCTTAGCATCAAGGGGAAGGGCGGTGAAAACTGGGGAAGGGGGATTGCTGGCTGGCAAGTGGGGGTAAACAGAGGCGGGAGAAGGAAAGGACCAGCGGTCCGGAGTGGTAAAATCGTGAGCGGGCGTTGTTTTTTTTTTTTTTTTGCGAGTCCCGAATACTGTCCTCCAAGCAGGGGTTACAATCCTGACTGCTGCCTTGGGGTGAGGACCTTCTTTTTTAGGTCAGGACTTCTCTCGGAAGCGGCGAGCTCTTCCCTCTGTTTCTGCCTTGTCTCCCGGGGAGAGGAAGACGCCACAAAAACTGAATGTTGACATGGGAGAAAGTCAACAGATTCTGATACGGAATTTCAGTCGGGCACAGTGCGCTGCAGGACTCCCATTCACACACACACACACACACTCACACACCTCAAAATGAGCCTATTTCATTTTCCTTGTTCAGGATGTTTATCCCCGCTAGCGCTTCAAGCCCGGGGTGTTGAGTTTTGCCTTCTCTAACTGCTGGACGCTGCCCAGTCCTCTGCCAGACATATAAATAGAAGACAGTGAAGAGACCCCTGTGACCGCAACTCTAAGTTAGGACAACGGGTGGTTTAGAAGTGAAGGGGCCAGCTGGCTCTGGCAGTCCCTTTTTGGATGACAGTGAGAGCGGAAGGAAATTTGGGAAGCCACGCGGCCCCTTATGCCCCGGCTGTAGATTTAACGATTAACCCTCATCATGGACGCCGCGGTAGAGAGGGTGAAGTGGGCGAAGGGCAAAGGGCGCAGCAGTTCCTCAAAACCCCGGGAAGTCGCAGAGTCGGGAGTGAGGAAGGGAATCCGGCTCTAATTTGGTGCTGGCTACTTTGCTTGGCTGCAGTGGTGTTAGGCGTGAGTGGAGTGTTTGGGTCTGGGAGCGTGACCCGTTTGACCTCTCTCTGCCCCGCGGGCACCATGGGCCCGGGTGGCCCTGGCGACAGTGCGGGATTCCTTTTCGCGCTCTTGCAAGCGTAGCGTGCTCCTGTACAAGTGTGTGCTCCACTTGTGTCCTGGGTTTGGGGGACAGTCGCCGATGTAGGCAGGTGCCAGCGCGATAGTCCTTCAGGATTTTGCGCGCACCGCGTCCCGGACAGTGAGGTGACGGGCTTGAGTGGGACAAGGGCGGGAGTGCTTGCGGCCACTGCCCCTGGTTGCGCACCTGGTTCCCTTTCTCTACCCTCGGCTCTGCTCGCGCTTCCTCTTCTGGGTTCCTTCTTGTACCCTGAGGTCTGATCTAACTGCGGTGGCCGAGCCTGGGACACGTTTCTTGTTTCTGAGCTTCGGCCAGGACTGACTGTCTCCGCGAGGGGAGGAGCCGCAGGTGCTCCAGTGTCCGAGCGCGCACGGTGCCAAAGAGGCTGTGCTGCGACCTCCTGGGCTGCCCGCGCCCAATTCACGCCCAACTCTGGTAAAGACCGAAGCGAAGAGTGGCGCCAGTCCTGAGCTCCCGCAGGACACCACCGTCCTAGGAAAACGCTGTTCGCCTCTTGGAAGCCACTGCTTCTTCCCCTAGCAAGGAGGCGGCCAGCAGTAGGTCTCACGGCCCGCTCCTTTCGCCGGGTTCGAATCTCGGCTCCCTTGTTGAGGACTTGGAGAAGCCTGGAACCCCGCTGTCTTAAGAAAACAAATAAAGACTCTCGGTGGACCGAGGGTGTTGCTCGGCTCGTGGCAGACCAGTTGGCAACCCCTTGCCGGCGAAGGCGAGCCCGCACCGGTCGTGAGTGACACACACGGTTCCAGAAGGCGGCACTGGGCTTACGACCAGGCGTGGGCTTCATCTGTGCCCTTCCAGAACCGGACTTTACCAGGAAAAAAAAAAAAAAAAAAAAGGTTACTTTTATACAACATGGGCAACGTGCTTTTAAAGAAATCCAAAGGCGCAACTAATGACAAAGAAATATTAGGAAAGAAGACGTAAGATAAACCGCAGGAAGTTACGGGAGGGCAGGCGGCCGAGCCTGCCTGAACGACCTTCCCCCTGACAAAGGAGGTTAAGGCAAGAATGTGGGCTGAATACTGTGGGGATTAGGGAGCCGGGAGCCCTCCAGACGTCGTTGAGCCCCGCAATCTGACTGCAAATTCCAGAATGATTTTAAGCCTGAGTCTTTCTGCAGGTGAAGCAGGAACCCAGAGAGGTGGGACCCCCACAAAGCAATCTTTTCCCATTGCGTAGACAAAAGCGTGAGCGACAGTGTTTGCACAGTGACCTGATGACCCCGCTGACCAGGTGTAGACAGCCTCAAGTTCTAAATATTTGCATTGTCCCAATTTCCCATTTGCTTCGGATTTTAGTGCGCTTTCGCTCCACAGTACAGTCAATTAGCGATTACCTACCACCCGCATTAGCAGGCGAGCTGGACAGCGGGAGAGTGCCCCAGTACTGCGGAGAGGGAGGAGGAGGAGGAGGCCAGCAGCAAGGACAGCCGCTTGCAGTCCTGCAGAAGTGGACAATTAATTAACTGGGGTTAAGGGTACTTTCTCTTGCCTTAAAAATGTCCTTTGAGACTCGGGTTTGGGGGGCTGACATGGTGACTATTTGGTGGATTTCTCTAGCTGGGAAATGCGGGTGCCCTTCTAATTGAAGAGGTGGGGGAGGGTGGGGAGGATTGGATGAAGGGACCTTGTGTCATTTCTTACAATTAGGGAAAAATTTCAAGAATAGAGCTGAGAAGCTGTGGGTGCACGAAGCTAATGAGGAGGAAGGAGTGTGAGATGTTACTCATTTTGGAAAACCAAGGTTAGAGAGCCTCTGAAGCTGCAGTTTGCCGGGACGGCACAAGGCGCATCTGCATGCATTTGAAGATGTCTTGATGAGCGCTCTATTTACCTCTGCAGTGGCTTTCTGCCCTTTCTTCCTTCCTGGAATTAGTATTAGCAATACCCATAATACAGATGTGTGCAGACAGGGCCCACCGGGTTCTGTGCCTTGAAAGTCCTCTTTCCTCTTGGTTACTCCCCTCCCTGTCTTTCTTCTTCCACCCCCCTTATTCTTACAGAAATCTTTGCAGGAATGTGGGCTCCAAATTCACGCACAGGGAGGTTTCTTAGAGGTGGTGGGCCAGCAACCTTTCAGGGTGGTGGGACCCGGCTCCTGCCCCTGGTGCAGGATCAAAGGGATTGACAACACAAGGTAACAGGTGTAGGTAAGATGCTGCCTTGGACCTGGCAGGGGGAGAAATCAGCTGCAAATAGATATGGATGGTGAGCATCACTTTTTTTCTTTTTTCTTTTGACCTTGAGTTTTATAGGGGGTCCCCCATCAAAATGGAGCATCTGTCAACCATTTTGAAGCAGTTGGTGGTGGTAGGTGGCCAGGTTGGCCTTAATTGGTGAAACTGATATTGATTCTCCCTTGTAAAATGTACTTGGCTAACTGTTAGGGACAGACTGGATGGCCATTCTGCGAGGTGAGTTCCTGCTTCTGCTACTATTTTCTTAGACTTTTTTTTTCAAACCAGACTCCCTATTATCTGTCAAGCTGGGTCTAGCCACAGATGTTTTACTGCAGTATCTCACCCCCAGATGCCCCTTAATTATAATTTGCTTTAATTATAATGTTGGGGGGTTAAGGGATTGGTTCTGGAGGATAGACAAATAGAGCAAAACTTCACAGCCAAATTAATTGGAAGTTTCTTCTTATGAGGGAGAGGCTGCCAAACATATGGGATATTGCTACAGAATGTGACATCGGAAAAATACTGTGTGGAGATTTAGGAATGATTAGATGGGAAAGGGCAATAGAGATAGGGATGTGTCTACAGCATCTCCCAGACAGCCTTGGGTTGGCTTAGTGTATTTTTCTGTTTTATTTACAGTCACCAGAATATTTTATATACCAGCGAAGGATACTAATTCCATGACAGTCTATCTTCTGGAAGATTATCTTTTCTCTGCATATGTCATTTGTGTGCTATTTTGCTGCTGGGCTCATATTAAAATAGTATCAAAATTACAGCTTTAAAATAGTAACATCGAACTGATCTCTAGAACCATTTTAATCTACTCTTTCATTAAAGAGCTAGGTTATTTGTTTGGTTTTGTTTTTATTTTTGTTGTTGTTGTTTGGAACTGTCTAAGCAGAAACAGAATAAAGGAAGTTTTTGAAAAGACTCCAGACTGCCAAGTGAACAGATAAAATCTGCTGGGGAAAGAGAACTAGAAAGAAATGGAAAAGGAACCAGAGGGAAGGACACCATCACTTCTGACACCAGCCTTCCCTGGCTCCTAGTCATTAAGACATTCGTTTAAGAAATTAGATATTAAGACACTTGTAGATTAACATATTTTAAGCATGTAAATATAATCATGTAGAGATGTGATGCCAATTTTTAAATTAGGGTTCCCCCCCCAACATTTTTGTGTCTTAGCCTTTGTCTCTGTGTAATCCACCGCAGAACATCATGATGTTCAGTGCATCTTTTTATTTGGTTTTAAATAATTAATATCATAACTCTGTACTCCAGCCATGCTGATTTTAGATGACTTCTACTAGGTTATGAAAATCACTTATGATTTTATGACGTTTTGGAAAGTTATACTAGTATCTCTTGAAAACACAATAGAATAAATAAAAATGTTAAGAAGTAATTATAAATTGCCCAGTAAAAATGAACTAAATGTCTTCAGTAACAGAGTCTGTGGGGAATGCCACAGGCATCTAGTCACGATTTGTCTCATAGGACTGAATCCTGGAACTAAGGCTTTTTAGTTGTAAATTGCTGGATAAACCAGCCCACAGGTCTATAGGTCACAGTCATCAGGCAACTTAAGAAAGAGCGAGTGATCAGAAAATAAGATTCTACTGCCAGCAGTAATGGTGACAACTTTGAATTGGAAAGTTTATTTTTGAAGCAATTGTCCAGGCACAAGACTGTAATTTAATTTCAAAAAGGCTTTATGTCTGATCTGCCGCCTAGAAGATTTAAATGTTTCAGAACTCAGGGGAGAGTTAGGCGAGGGTGCTATCATTTGGTAAGCCCTGTCTTAGCTCATGGGAACACTTTAGAACTGATCATTTCCAGACGGAACCAATGAGCTTCCACACTGTTATCTTCCCAAGCCCAGAATTTTAAAAAAGGCTCCCTGCTTTGTTCAGTAGGGAAGATCTCTGACCACTGCTTTCTTCTTCCTCCATAGAAGGCAGGAATGGAAATGTTTGAGAAAAGTGTGAACGTGATATTTTAGTTGTGTATAAGTTTCCTTCATGGCCATTTTAAAAGTCGGTAAAGAAACTTGAATTTAAAATCAACCAACTTAAATTTACACCAACCAACTACTTATTCAGATAAGTCACCTGTAAGAGAACAGAGGAGGAAAGCCTCAGAGAGAGGTGTTTTGGTGTTAATGGTGGAAGCCATGATCTTCAGTCAGCCCTAGAAACTACCCTGGAGACAAAGAAGGTCTTATCCCCAGTTCAGCTCCCAAGCCTGTGCTTAGCCTCACAACCCTCAGTGGGAAGAGTAGTGTGGGGTCTACAAGCAGGGAGCCAAGGAAGTATCTTCCACATAGCCCTTTCTCAGCTAGAAGAAACCCCATTCTGAGCTCCCAGACTGCGGGAGCTCTATTATGAAAAACTGAACTATATACATCCAAAAGGCAGTTAAAAGGCAATCCCCCATAAAGACTGCAAGTTCAGATTTTGCAAAATATTAATCTGGCAACACAGCATAGCCAAACGGATTCCTGTCGGTGTAAACTAACTCGCTTTAAAAACACCAGAGCCATGCATCAGCACTGTGAGCCCACCGGAAAGATGTGAGATCAAGATTCATTTACCCAGGAAGGGGCACTTTCTGAAGTACATTTTAGATGGCATTGCTGGGTGTGCGGTAGTCTCCTTAGTGATTTCTTTTCCCTCCTTCTACCCTGTTGACCTTCTGTGACCAAAGAGATAGAAAAGACCATTTTTCAAGGAATTAAAATCGATCATGTAAACACATACCCTCTGAAATGTTTGCTGGTGGCTTCTGGTTCCTTAAGAGCAGTTTCTTGGAAGTGGAAAAAAAAAAAAGATACACACAGGTAGGCAGCTATCTCAAGAGGGCATGGGTGACTTGATATGCTGCAGATCACACCAGGCTTCATTTCCCAGCTTCCCCAACTGCTGGTGGAGGAATTGAGGGCTTGAAAGAGCAGCCCACTTTCTATTGAGCCAGTGTGAGGACTAAACCTGCAAACACTTCAGGAACTTTGAGGGCAGCCTTGTGAGTCTTGTAGGCTCCTGAGAAGGAACTGGACTATGGTTCCAGGGAAAACTCTATAACCTTTTGGACCTTTCAGCATCCCTAAGAACAATGCCCCAGCTTCCTGCTCATCAGAACCTGTTCCGTTCTCACCTGCACATGCAAATGACCTCATCCCAAGGAGGAGTCTGCTAGATTTCTCTTTCCCAAAGAGATGACAGTCTCATAATTGCATTGTCTCCCATCCTCTAGGAGACTGAAAGGAGTGTGCATCTGGATGCCTTAGAAGTCAGGGAGCGGAGTTTGAGTGGATCAGTGAAGAAAGGTATAGGGGGAGGGGGATGGTGAGGTGTGAAGTAGGGTTTTGTTGTTTGGTTTTTGTTTGGTTTGGTTTTTATCTTTTTCCCTGACAGTACCAGAAGGTGAACTTAAGAGGCTTGTTCTTGCCAGGCAAGTGTCTACTACTGAGCTACAGCTCCAGTCCTGACCCAATCTTGATTCACCTCAAATATATAAATCAACCTTTTTGGTGACTGGCTGTGAGACCAGGCAGAGGGGAGCTAATGACTGGGCAATGGTATTGGCAAGCTGGGTGGTCAGCACTCAGCTCATGTGATCACAACCTGGCAGTCACAGACAGGTGCTATCACTCCCATTTTAGGCGTAAGAAAACAGAGGTTCAAAGAAGTTTAGTAATTTGCTCACATCTGGGATCTGCATGTGGATCTGGCTCTAGCCACTAAGCAACAGAGCAGACCTAAGGGTTTGAAGGTCCAAACTTGACACAGCTTTGAAAGCTTTCAAAATCACTCAGGAGTTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTCTCCCATCCCTCCCTCCCACCTCCCCTTCCTCCCTCTGCCCCAAAGAAGAGGAAAGAAGAGAACCGGTTCCACTCCCCTCCTGGTGGGTTTCTGTGGCACTCTTGTGCACTCTCCAGTCACCCCAGGCTGGACAGCTCCCTCAGTCAATAGTGCTTTTCTTGACAAGCTTGACTGCAGACCTGGCTCTTTGCCAAAACGAAAAACACCTTGGCCTATGGATATGTGCATGTTTGTGTGCAAAACAGGTGGCCTGTTTGCATCTGTGCATGTGTGCACATCTAGATTATATGTGTGTCTCTTTAAGTGTTTGTGAATTTGTGTGTGGGTGTGTATGCATATTAAGTGTGTGCACCCTTTGGCTAGTGGCTCATCTATCTTCTAGTCACTGCAAAACAGCAGTTTCAAGACAATCTCTGTCTGCCTTCATTTGCCCTCTATAAAATGACAGAATCCAGCCAAATTAGGCTTGTGTATATGTATGTGTCTTAGGGTGTATCTTTGTTTATCTGTGACTGTTTATACGTGCACATGTTTGTATATTGAGCCCCTGTATGTGGCTGTATGTGAGGATGTCTGTATAGATAGGTAGCATGCCTGTGTGTACATGCAGCTGGGCCTGACTCCATGCCTGAGCGCTCTGCAGGACACTGGAAGCTCTGGTGTGTGGTGTTCAGAATCATGGTTTCCTCCCTTGGCTATCCCAGAGTTTCCTCTATCTTTCTAAGCCTGAGTTTCCTGTCTGCAGAGCTTTAGCAGAGATCACCACACTTAATGTGCACCTAGGATTAAAGCTTCCACTTCAGATGAAATGACTCCTCTTAGAGGGAATTGAATTTACAGATTACAGCCGGTCTTTAGTGACTCTAAAGGCCTTTCTCAATTCCAGTTTCCAAAGGAGGACTTTGTGATGTTACTAAATACTGCCAGAAGTTGAGCTGACTGGGGAGCTGGAGAGTCCCAGGCCTCTAAAATGGTGTGGCTACAGCTTTATTATTGGAGGGGGGGGGAGTATATGACTTCTGTACTGGTTAGGTTTTCCCAATCATAAATATGCAATAATAACATCAATAATAAGTCAGTATACCAAAAAAAAGATATTGGAAAATGTCCAGATACTTTTGGTTTTTTACTAATCAGATGGGGTTGTGTATTTTAGAATGTGGGGTCTGAGTTCACAGGTCAGCTCCTTCTGAGGGAAGGGATGGGTCTGAAGTTGACAGGTGCCATCAACAAGCCAGCACCTCCCAGCTGAAGTGCTCTTGTGGGCGGGGTCTTCCTGTTCCCAGCCCTCCCCTGAGCATTAGGTATCCATCCCATGACACAAATCCTAAATTTATGTCTCGGAAATTTGCATCTGCTCAAATGTTAGGTAGCACAAGAATCTGTCTCCATTTCCTATCTAGAAATGTAAGGTGGTGGTCAGCCCCCTCCAGTGGCCTGGGTTAGCCTATCTTAAAGAGTACATCCAGGCTTAGGCTGGGTCCTCATGCCCACACAGTAGTCTCTGGACACGCTGCTGACCCTGCAGACACTTCCTCATCTGTTAGAGAGGATGACAGGACCCTTCCTGCTTCACTGTGTGAAGCTGAATTTAAAATATGCCTGCTACAGTTCATAACAGGCCCTCCATGCCAGGTTTTATTATTCTTCCTGGGCTTCACAACTGTTTCTAACTTATTTTTTTACTTTAAGATCTCACCCTTTCTGTGTCTTTGTCATCTCTTTCAGTTGATAGTGGAATGTATTTGGAAGGGTTTGTTTGTTTTTAACATAAAACGTGTCCTTAATCTATACCTTACATTTGTATCAAACCCAAGGGTCTAGTTTGGTCCCCAGACATCCCCTGATCATGGCTAGCTGGATGTTCCAACCTGCCCAGCTGTGATGTCTGCTAGCTGCAGACTGGATCTCCTATTAGCCTTCATAGCTTCTAGCCCTGTGCTCTGCGCTCCCGCCCCGGCGCTGCTCCCTGCATACATTAGCCCTAATGTATTCTCTCTCGAATACCCATCATATTAAGTCTCTCGCTAGGTACCTTGCTCGAAATAAATTTTATGGCCATACATCCTCGCCCTCATCACATGCATTTGTAGGTTGGAGGAGAAATACAGTCGTATCAAAGCGGTCGCACCTAGTAGACTAAACAATTGGGTAGGATTAGGCTGTAGTCCTGGAGCCAAGGGGGAGGCGGCTGTCTAGCCCAAGTACTCTGCTCAGAATCCAGGACCAGGCTCGCTCGGTCCCACAAAGAAGTCCCGGGTGAGCCATCGGGACTTCTTTGAGGAGGCGTAACCAACTGTGTTCTTCTGGGACCCGGGGGTGGGGGGAGGGTTGCGGGGAGAGGGGGAGGTGATGCCCAGGGGTGGCAGGTGGTTGGCGCAGCGACAATCGACACTCAGCAGTCAAGTGGCCAAGGTGCTGTACTGTGACCCGTCCTCTTTATCCTTGTCGTTCAGCTTTCTCCCTCTCTGCATCTTTTGTCCTTGATTCACTTCTTTGAGCTGGAAGGCTTCTGAGTTGTCTGCCTTTCCCTGACGGATGTGTGGGAGCAGGCATCCTTGCTAACCTCCAACCTAACCCCTCCCCTTCGGGAACCACTGCCCCTTGTTAGAGGCTGGGCTTGACCTGGCTCTTCACCGCTGCACTGTGCTTACAGGCAGTCTCTCCTGGCCAGCACTCTTTTCAAGCCTTTCCCCAACAGCCCCGCTGCCCCGCGCCCCACCCCCACCCCACCCCGGTGGTCCCAGGTAGAGACCACAGGAGTGGCTGAATAAATACTTCAGGTGCGCAGGTATGCCCCAAGCTTTTCTGGCTTGCCCCACGATCTGCACTGGAGGGCAATGAGGTGTTTGAGAGAAATGGCTATCAAGATCCAGAGAGGTGAAGCCCACAGACAGACTGGCAGGACTTTCCATTTCTAAGAGCAGCTAACCCATCTTGTAATCACAGAGAACCCTGAGGGATGAAGGCTGTGGGCCTTGCCCTGACTTTCCCCCAGGTGTTGATTCCTTCACCTCAGGTAATCCTGAGAGGAAGTGTTGGCCACATCACCCCAGTTTTCCAAGTGAGGAGCTGAGGCAGAGTGGTCATTTGCCCAAGGTGACAAAGCAGAGGCAGGATGCAAATGCAGACAGTCTGGTACTAGAATCCACACTTTACCGGTGTCCTTCCCATCTCTTGTTAAGTTGCTGTGTGAGCCATCAGAAGTCCTCCGTAAATACTCCAGTTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATGCCTTTCGCACAGAGGAGAACTTATGTTTGAGACAAGGTCTTGCCTAATCTGTTTTTAAACTCGTAGTCCTTCTACTCAGGCTTCCCAAATGCTGGGATAACAGGTGTGCGCCACGTTCCTGGCTTGGAAAAAATCTGTGAAGTAGAAAGAAAGAAATCCTAGAATACAAACGGTGGTGATTAGCAAGTGTCCAGCCTGCACAGCTTTCTCGGCCTAGGAGTCAGGGAGCGGCACTGACCAGCAGATCTGATTTTCAAATGGATGCTGGCGATCCTTAGGCTCGAAAAGGGACAGGGGAGGTTGGGGCTTAATGGCTCCAAGGTGGCCTCTTGGGTGTTACCGCTATTGATGAGGTTTAGCACGTATTCCAAGTTCAAACAAGTGTCTGGAGAGTTAAGAAAGATTCCTCTGAACATGGATGTTTTTGAGATTTTTTTTTGTTAGCATACATTAATTGTACATAATATTGAGTTCCACATGTGTATATGATGTCTTTTGGTCGCGTCTGCTTACCTCATACTCTTTCTGGGTCCCTGTCTCCACATCTCCCACCCTTCGCAGATCATCTTTTCCATTCCATTCCATTCTTTTCTTTCCCTCTTTTCTTTCTTTCCTTCTGACAGGATTGCATGGAACCCAGACTGCAGTCACATTTTCTATGTAACTCAGGCTGTCCTTAAACTCCCGATCCTTCAGTCTCCACCTCCCAACAGCTGAAATCACAGATATACCTAGTACACTTCTTTTAGAATTATTTTAGGTTTATTTTTTTTATTAATTAATGTGTTTTATGTGTATGAGTGTTTTGCCGGCATGCATGCCCGTGCACCATGCGCCTGGCTGTTCTCTGCAGATGTCAGAAATGGGTATTAGATCTGAAACTGGAGTTACAGATGGTTGTGAGCCACCATAGCTGGAAACATAACTCCAGCCCCCTGTGAGCCTTTAACTTCTGAGCCTTATCTCCAGCTCCATCTTTTTTTTTAAAGATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTCGGAAGAACAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCCAGCTCCATCTTTAAAAGACTTAGAATCTGCTAGATCTAACTTCATTATTTATGAATGAACAAAAACTCCATGGGTATATATCTCCCTCCCTGCCTTGCAACAGCGTGTCACTATGCTGCTGCCTCTTGGGTGCAAGGATAAAAGGTACACACCACCGCACTCTGCTCCATTTTCTTTTATTTTTCACATTTATTTTCTCTATATGTGCACGTGTCTTTGTGTGTATGCTACATGTGTGCAGGTGCCCGAAGAGGCCAGAAGAGGGAGTCACGACTATATGGTCGTTTGAGAGCCTCCTGATGCGTAGGTACTGGGAATCAAACTTAGGTCCTCTGGAAGACCAGGAAGTGCTCTTACCTGCTCAGCGGCCTCTCTAGTACCATATCCTATTTTCTTTATCCATTCACCTGTGGATGAACACCTAGGCCAATCTTAAAATGCCACTGTTGTGAAGATTGCCGTGAGAATCATGGGTATGCAGGCGCCTCTATTGTGTGCTGTCTGCCCTTCCTTAGGTTATATATTCAGGAATGGTGCAAGCTGGAATATGCCAAGTCTATTTTTAGTTTTTTGAGGCACAGCCATGGGATTTTTCATAGTAGCTGCATTCATTTATATTCCCTTCGACAGTCACTAAGGTTCTTCTCCACACATCCTCTGCCTTTTTTTGTTTTGTTGTTTGTTTCTTCACTGTAGACACTCTGTTGAGGGTGAGGTGAAATCTCAGTGGCCATGTAGGTTTTGATATGTTGGTTTTTTCCCCTTGGTAACGTTTTAAAAATACTATCTCACTCTTGAGCATGACAAATGTTCAAGATTCACGAGCTGTTCAGGTTTAGTACTTTTATCAACATTGTGGAGCAAGGAAGGAGGAAACACAGAACCCTTCCAAATGAATGTTGGTAGTGAGAGTGGAAGCAGTTGCTATGGAGCAGAAAACCTTGCAGAACTGGACTCTTGTGCCAGGCACCTGCTAATTGCTGAAAGAGAAACATTGTTCCTATCCCTGGGGACCCCTCTTTCCAGTGGGAGTAATTATGTGCAAACAATTAGCAAAAATTAATTATAACAGATAAGGGAAAGTCATCGTTGTAGAAGCTGGCCCCTGTGAGTGTGTACATGGGGGTGGGGCAATGCTTGGACCTTTATGTGTTTACTCTTACTATCTGTTACATTCCTCTCTCTCTCTCTCTCTCTCTCTGTAGGAGTATCGGAAAAAATATTTACAGACTCTAGCACAGCCATGGAAACCTGGTCATTTTACAGATTTTTAAAAAGTACTCCAAGATATTATTAAACCTCAAGCAATACCTTGATGGAATTGTCAGAGCAGCAGGAAGTCACTGATAGAAAGGATGGGGCAATGGTTAGAGTTTGGTTGCAGGCAACAGACCCCCACTGTCATTATTGTAGTGGACAGTGGTTCATTGCTAGGTGCTGAGTGACTTTCAGCTTGGAGGAGACACCTTTCTGTCGAATGTGCAGGGACAAGCCTTTCCCTCTAGAACGTCATTGCCTTGGCCATGATTGGTCAAGGTACTTCGACCACAGCTCTTCTTTGGCTCTCCTGAGACCCACACTGGTATGATATGAGGCTGTTCCTCAGCTGTCATCCATTTACCGCAGTTCTGAATGAAAGTTTCTTTCAATACCTCTGGTTGGTGAACTTCAAAGCACAAGCTGGGAACTGGGGATGCGGTTCAGTTGTACAGTACTTGCCTAACATGTGAGACCCCAATTCTATCCCTGCCACTTCAGAACCCACGCTGGAAGGGAGTCTGGAAAACCAAAGTATAACTTTCCTGTGTGAAGCATAGGAAAAACCATCACCAGGGGCATGCTGTTTGAGTCATGGCATCTCTTTCAGCTTATGAAGAGACTGAGTTTCCCTTGAGCACCCTCAGGCCTGGATCTTGGCTTAACCCCACTCCTGGTAGCATTTGCTTCTCAAGCCAGATGGCCTTGGTCCATGCCTAGATGCTTCACGTTGGGATGATGTTTTAATACAACTTCTACCCAGTAATGAAAACATGGCAGCCTGGGGGTGGGGTCCCATGAGGTACCCATTTCAGGGCCTGGTCTGGCTGAAGACTCATACTCTCTCCCTCTCTCTCCCCTCTGCAG
Seq C2 exon
AGATTCCCCAGTGTGCTGGCTGCAACCAACATATCCTGGATAAGTTCATCCTGAAGGTCCTGGACAGACACTGGCACAGCTCCTGCCTCAAGTGCGCAGACTGCCAGATGCAGCTGGCTGACAGATGCTTCTCCAGGGCCGGCAGTGTCTACTGCAAGGAAGATTTCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026468:ENSMUST00000027740:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0041217=LIM=PU(94.6=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types