BtaINT0086251 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006214 | LOXL2
Description
lysyl oxidase homolog 2 precursor [Source:RefSeq peptide;Acc:NP_001092523]
Coordinates
chr8:71285606-71286996:-
Coord C1 exon
chr8:71286881-71286996
Coord A exon
chr8:71285743-71286880
Coord C2 exon
chr8:71285606-71285742
Length
1138 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
CCCTCTGTCTCCACATGCAGACA
3' ss Score
10.35
Exon sequences
Seq C1 exon
GCACTACCACAGCATGGAGGTGTTCACCCACTACGACCTGCTGAACCTCAATGGCACCAAGGTGGCAGAGGGCCACAAAGCTAGCTTCTGCTTGGAGGACACAGAATGTGAAGGAG
Seq A exon
GTATTCGGGGGACAGGGCGGGCCAGGGAGATTCTGAGGGACTCAGATGCTCCCGCGTGTGCTCATTCGGCCAGGATCCCAGGCCTGGCTCGGGACTCTGTGTCACCCTGGCCCCTGCTGACTCCTCACTGGAGACCTCATGACTACCATCTGGGGCTGGAGGGATAGGGTGGGCAAGGCCTGGCTATAAAGGCACCTGGGTCCCCAGAGTCATGCTGACAGGCACTGGTGGATCCAGTGCGTCCACTGGTGGGTCTCCCCTGTGAGGCTCAAACCCTTGAACCTGACACGCAGTCCCCTCCCGCTCTGGCTGCCACACTTTCTCTCTGTGTCCAACACAGATACACAAGCCCCACAGGTTCTTACCTTCCAGTTCAAGCTCAAAGCCCCACTTTGAGGTTCCCAGACTCTCTTGACTGCCCCAGGCAGAGGCAGCACCCCACCCACACCCCCAGTCACTTCCATACCTGCACGGTGACCACTGTGGGCGCCCCTGCCATCCTGGCCTGACCGAGCTCTCTCAAGAGGAGACAAATGACTCTTCTCAGGGCAGCTGGGACTTAAGAGTAGCGCCCAGACTCGGCAGGCTCTCAGTAAATGGGTGCTAAATGTCAGTGGTTGATGTGGCCCCTGGCATGTCATGAAATCACCCAGCAGATGGGTTTTGAGCACCCACTCTGTGCCACACAAGGGGCTGACCCAGGACGGGTCAGAGAGATGGGTCAGACCAAGACCACATCCAAGAACGGATGCCCTCGGGGAGACCAGATGACCCCACCTCAGGCTCAACAATAAACACCATAACTTACCCAGAATAGCGCATGCTTCATTCCCAGGCTGATATTCCTCAGAAAGGCCAGGGTGGGCCAGAGTGGCCCAGGAGGGCTTCATGGAGGAGGATGCAGTGGGATGTGGATAGGGAATTGACGGGGGGATTCTACCAAAAGCAGAGCAGAGCAGGGATGGGCTGCCGAGTCCAGAGGCAGCCAAGGCTGTGGGCCTGGAGAAGGGAGAGATGCTGAAGGTGGGGTCTGGAGATGCGCCTCTGCTTAGCAGGCTGCTTGGGGGCCTTCGTGGGGAGCACGGTGGAGGGACCGTGGGTGCCTGGTGACTGGGCTTCCCTCTGTCTCCACATGCAG
Seq C2 exon
ACATCCAGAAGAGTTACGAGTGCGCCAACTTTGGTGAGCAGGGCATCACCATGGGCTGCTGGGACATGTACCGTCATGACATCGACTGCCAGTGGGTCGACATCACCGACGTGCCTCCTGGAGACTACCTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006214:ENSBTAT00000008159:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(19.1=100)
A:
NA
C2:
PF0118612=Lysyl_oxidase=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGGAGGTGTTCACCC
R:
AACAGGTAGTCTCCAGGAGGC
Band lengths:
240-1378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]