HsaINT0095567 @ hg38
Intron Retention
Gene
ENSG00000134013 | LOXL2
Description
lysyl oxidase like 2 [Source:HGNC Symbol;Acc:HGNC:6666]
Coordinates
chr8:23302027-23303397:-
Coord C1 exon
chr8:23303282-23303397
Coord A exon
chr8:23302164-23303281
Coord C2 exon
chr8:23302027-23302163
Length
1118 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCT
5' ss Score
7.27
3' ss Seq
CTCCTCTACCCTGCCCGCAGACA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GCACTACCACAGCATGGAGGTGTTCACCCACTATGACCTGCTGAACCTCAATGGCACCAAGGTGGCAGAGGGCCACAAGGCCAGCTTCTGCTTGGAGGACACAGAATGTGAAGGAG
Seq A exon
GTATCTGAGCGGAGTGGGGGGATGGGAGGCCTCAGAGGGACTCGAATGCCTCTGCCTCCACGATCACCTGGCTGGAGCCCAGGCCTGGCACTGACCCTGTGTCACTCTGACCACTGCCACCTTTCCCCACCTGGACCTTCCTCAGCTATAGTGAGGCGCTGGGGGCATGGGCATGACCTGGTTCCAAGGGCACCCGGATTCCCCAGAGCTGTGCTGACAGGCACTGGTCGGTCCACAGGGCCTCCTGGACAAGATCCAGACTCTGGGGACCCTGCTCCATCTGGGCTTAGCAGCCTAGACCCTGATGCGTATGCCCCTCCCACTCTGGCTGCCACCAACCTTTTTTCTGGTGTCCCAATGCCAAGTGTCCCTACCACACCAGGTGTCACCCTTCAATTATATCTCAAATGCCCTCCTCTGAAGCGCCCCCCCGTCCCGGCAGGTGTGGCACTCTGCTCACACTTCTGGTAGGTCACCACACCTGCCCTGTGATCACCTGTTAGTGCACCTGCAGCCCTGGGGGCTCTTCATGGGGAGACATGTCAGTTCTTCTTGCTAGACCCACTGTTTACAGCAGTGTCCAGGCATGGCAGCTTCTCAGTAAATGCGTGTTTAATTTGTTATTCATTGAAGCGGCCCGCCACTGACTTGCCGTGAAATCACACAGCAGACAGGTGTTGACCTCTTACCATGTGCAGATAACATGTAAGTGTCAGAGAGACATGGGCCTACACTCTAATTGCCGATCCTCCAGAGGAGACAGACAGTATGACCCCCCACGTTTTGCTAAACCACAGGCACCAGAGATTTCCTCGGTCCACACACACGCAGTTATCCCCAGGCTGAGGATGTCACAGAAAGGCCAGGGTGGATCAGAGTGGTCAGGGAGGGCTTCATGGAGGAAGGGGAACTTGAGCCTGGCCTGAGAGAAGAGGCAGGATGTGGGTAGGGAATTGAGTGGGGGGTTCTACTGAAATGAGAACAGATGAGCAGCCCACACAGTGGGGTGGGATGCCGAGCCCAGATGAAGCAGCGGTAGGGGCCTTGGAAGCAGGAAGAGGGTGCGGCAGTGGGGCCATGGTTCCCTGGTGATGAGCTCTCCTCTACCCTGCCCGCAG
Seq C2 exon
ACATCCAGAAGAATTACGAGTGTGCCAACTTCGGCGATCAGGGCATCACCATGGGCTGCTGGGACATGTACCGCCATGACATCGACTGCCAGTGGGTTGACATCACTGACGTGCCCCCTGGAGACTACCTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134013:ENST00000389131:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(19.1=100)
A:
NA
C2:
PF0118612=Lysyl_oxidase=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGGAGGTGTTCACCC
R:
GAACAGGTAGTCTCCAGGGGG
Band lengths:
241-1359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development