BtaINT0086267 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018578 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
chr11:10076334-10086584:+
Coord C1 exon
chr11:10076334-10076548
Coord A exon
chr11:10076549-10086367
Coord C2 exon
chr11:10086368-10086584
Length
9819 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
TCCCACTCCTGTCCCCCCAGGCT
3' ss Score
9.97
Exon sequences
Seq C1 exon
GTAGAGCATCACCTGCAAGTGGAGGAGGTGCGACTTCGGCCAGCTGTTGGAAGGGGCAGACGGCCCCTGCCTGTGACTGAGGGACTGGTCGAAGTCAGGCTTCCGGATGGCTGGTCGCAAGTGTGTGACAAAGGCTGGAGTGCGCACAACAGCCATGTGATCTGCGGGATGCTGGGCTTCCCGAGCGAAAAGCGGGTCAACGTGGGCTTCTACAG
Seq A exon
GTGAAGCGACGTGGGCGCTGGTGCAGCAGTCTGGAGTTGAGGGGTGCTTGTTAAGGAGCGGTGTTGAGGGACCTCCGAAGGGGTTGGTTCACCTGGGGAGCCGGGGGAAATCTGGAGGCCTCGGTGAAACTAGAGAGTTGAGAAATCTTGGACCATGAAGCGGCCCCCGAGGCGGATTTGCTGCGGGGACCAGCGAAGCTCTGGCCCCAGTGGCCAGAGCCGGGGCGGGGCGAGCGGCGGCGGTGGCGTCGGGGCCGGCGGTCGGCAGGTGGCGTCTCCGCGCCCCGGGGCCAGAGCTGGGCCTCGCGGGGCCACGCCCAGCGGCCCGGGAGCCCGCGGGTCCGAGTCGGTGGGTGGGGGTAGCGACCACGCCCCGCCGAGGCAGTACCCGGGCGGGGCCTAACGCCGTAAGTCTGACGGCGACCGGCCCGGGGCGCCCGCGGGGCGGCGGTCCCATCCTGGCCGCCAATCCCTGAAGGCCGGAGGGCGCCGGAAGAGGCTGGGGCCCTTCCCTGGGTCCCGGCGGCCCACTAGGCGTCTGTGAGCGCGAGAGCACTCAGGACTGCTAAACTAGTTTTCCAGAATATCCTTCAGCCCTGGAGGCCGGCCCTCTCCACCTGCACTGGAGCCCTGGTGTAGGCGCCGGCTTCCGGGGAATGTATCACACTGGGGACCGGCTCTTTGCTTACTGCGTCTCGCTTCCCTGGAGCATCTAATTTGGCCGTTTTAAGAAATTTTGAAATATCTTTATAATTTAAATGATTATCTTCTTCAGCTGTTCCTTAGACCAGTTTTGCAGGAAGAGCTCTTAACATCTGGGTGACCTTCTACTAGGCACGCTACTTCCGATGTGGGGCTGATCGGGGCAGGGTACAACATAACAGCTCTTTTTAATGAAAGCATCTAGATTTTGCACTGCCTTTCCGTTGAGGCAGCATCCCACTGCTCTTATTGACCTTGTAATCACCTAAATTAGGTCTTCCCTCCTCCTTGATACTGATAGAGCAGCCTATTTGAACCTAAATCTGTTGAGTTTACCCTATGAAATGTTTGATACATGTTCTCATGTTTGATACATCATTTAAAAACCATAATGATCCCATGAGATTATCTTGAATCTTGACATTATTTTGCACTTGTCATCCCTCCCTGCCCCCTCTGTTCAGTAGATATGATAGCTATGCCTCCTGACGTCATCAAAGTGACTGTTAAATGTGTTGAAATCTTTAGAACCAAAGTCTAACTCCTCTTATGAATCCTCCAGATTTACATCAAACCTTTAATCATTAGTTGTGAAATGTTTTTTCAACAGTTGGGACAAACTGAACACTACATTGATACAGCCAACATTTCATCATCTTATCTGTAATGAGATTATAGGAGATTTTATTAGTCTTTTGCTAAAATCCACATACACTATGTTCACAGCCATTCTGCAATTTTAGGAATCTTAAAGGAAGTCATGGTGGTTTGATTGAGCTGACTGTTACTGAAATCCTTTTAGATTTCTAAGGATCACCATATTTTTTCCTCAATGCTCACAAACTTTCTACTTAATGACTATTCTAGAACATAAATTATCTGTAAATTGGGGAATCCTTTTCCTCCTTTTTGAAAGTCAGTACATTAACCAGGCTCCAGTCTTTTCCATACTTGCTGAAATTTTTTTTGCCTTGGCTCTGAGAGACATCTGAAAGTTCTTTAGGCCCCAAGGAATATACTTTCTCTGGTATAGCAACTCATATACAGTTGAAAACATCTATGTGCTGTGCTCCTCTGCTGTTATCTACCTCGGGCCTATATTTCCCTATGCTTGTTCTTTACCTTCCCAGAACCAAATCCAGGTTCTGAAAGATTAGTGCGACTTAAATAGCAGGCATTTCAGATGAAGAGGGTAGCACGAACAAAGGTACAGAGAATAAACATTTATTGAGTGCCTATTGTGTGCCAGGGACTGTTGTAGACACTAGGAATTCAACAATAAACAACAACAACAAAACCCCCAAAATCCTTGATCTCATGAACTAGGGAAGAATCAGGAAAAAAGTAAAATTACAAAATGTAAGGATGGCAAAGAGTGTAATAGGTAAAAATAAAGCAGGGAAAATGTTAGGAAGTGGGACTGGAATTGCAGTTTTAAAATAAGTCAGAGGAGGCATCATTTGAGAAAATATTTATAGGGCACAATCTATGCAAAAATCTTGATGAGCATCTCCAGGAAGAGGCATCATAAATGAGAAGATACCAGAATGAGGGGTTAGGGGGAATTCTTGTCATACTCCAGGAAGCCACTGGGGCTGGAGCTAAGGGAACAAGGCAGAAGATGACAGGAGATGTAATTTAGGAGGAGATAAGGAAAGAATGAGGAGCCAGATCATGTAAGGCCATTTGAGAGACTTTAATTTTTACTGTGTGAGATGAGGTTTTGAGCAGAGGCGTGACATCTGTCTTCCACTTTTTGTGTATTGGGCTGTTTTGTTAAGAATAGACTGTAAGGAATGTGTAGAGTCAAGGAGGCAGGGAGACTAGTTAGGCAGTTATTGTCTCCTGAAAGCCAACTAAAGAAAGTGAGAGGTGATGTGACCAGTGAAAGTGGTGAAAAAGTGATCAAATTCTGTGTTGAAGATAAAGCCAACAGGATTTGCTGATGGATCCATCGTGGTATGAAAGAATGAGAGGAATTAGGGATCATTCCAAGGTTTTTGGCCTGAGCTAGATATGGAGTTGACCTCATTTGATAAAGAAAACAGTGAGTGGGGCATATTTTGTGTGGGGATGGGAGAGTGGAGATTGTATATTAGGAACTTGTTTTTAGACCAATTAAATTTGAGTTGCTTTAGATACTGAAATGGCGAAGCTATTGGATATATGACTCTAGAGTTCAGTTGAATTAAAGCCCTGAAACTGGACAACATCACCAAGGGAGGGAGCGTAAATAGAGAAAAGGAGGTGCAGGGACTGAACTCTAGGGAGTTTAAACATTATGAGGTCAGGAAGATAAGGCAAAATGCAAACAGAGAGGTGAGGTAGAAAGAAAACCAGGTGAGTGTGGAGACCTGGAAGCCAAGTAAAGTGTTTCAAGGAAGAGCAAGAGGGATCAACTGAGTCACTACTGCTGATGCATCCAAAAACATGAGGACTGAGAAATGAATAGGATTTAGTAACTTGGATGTCATTGTTGACCCCAACAGAGATGAAAATGAATAGGAAATTTTGAAAGACAGTTGACTAGAGTAGAAGATTTTTGTTTAGTCACTAAGTCATGTCCAACTCTTTTGTGACCCCGTGGACTGTAGCCTGTAGGGCTCCTCTGTCCATGGGATTTCCCAGCCAAGAATACTGGAGTGGGTAGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGAGACTGAACCCATGTCTTCTGCACTGCTGAGCCACCAGGGAAGCGAGAGAGAAGATGTATACTGAGAAATAGTGGAAGAAAAATCTGAATGGATAAAGTAAGGCTAGGAAATGGAACACTTTTAATGCCAGAGTGGAGAGTTTTACCTTTATCCTATGAAAAATTAAAAAATAAAAGTACTTGTATGGGACAGTGACAAAAATAAGGCCAGTGTTTTTAAAGTTCGTCTGATAGTAGTGAATTGGAAGAGGAGGTTCTAGACGCAGTAAGAGTAATTAGGAAATATAAAAATGAAGCTGACTAGGAGGATGACAACAAAGAGAGAGGAATGAATAGAGGTAGGATGACTGATAGAACACAGAAAATAAAAGAAGAGATAACTAAAATGATTCTGAAACTGCTCAAGAGAAGGATGGTGCCTGGCATCTCTGGGCTTTAAGTTAATATGAGCTAGCTTTAGACATGGGCCATCCCTGGGAATTTTGAGGCTCAGGAATTGTCCCTAAGTATGCACAGACTCAAGAAAACTTCAGAAATCAGGAATATATGTCTACATATTGGAATCTCTTACTGAGTCTGGAATATGAAGGCTGGAAAAGGAGATATATATTAAGTACAGAGTTCATTCTTAGTAGGGAAAGAGATTACAGTGGTCCTGGGAGATTCTGTGATGAGAATTTGTTGTAGATATTCCTTCACAGGTCAAGTCAGACAGAGGGAGACTCCTCATAGGTAATGCAATTATAAAGGCTAGGCAGGATAGTTATAAACAACTCTGCCTTCCTTGGAGAAAGAAGATGCATCTGGTAGCTTTTAGAGGAAGTTAGTAAGATTTAGAGAATAAGAAAATCATAATGTGATGTATCATATTTCAACTTTGATTTGGTACTTCTACCCTAGAACATGTGAAAGTTGTAGAATTTTAGAAGAGGAAAAGAATGTACAGATAACTGAGCCATTTAATGCCTTTTGGCAGGCAAAGAAATTGAGGTTCTAAGAGCTTAAGTGCTATTTAAGAAGACACTCTTCTAGTTCATTTCAGATATTCTTGTTCATATTCAGATATATTCACTGACAGATATTTACTGAGCTCCCACTGTTTGCCAAGCACTGCGCAAGGTGCTGAGAATACAGAGGTGATGAGAGAGTTGATTTGGCACCAGATCATAGAAGACCTTGTAGGCTATGGTAATGATTTGAATCTTTATGATAAAAGTAACGGAAAGTGATGGAAGTTTTTTAATGAGGAGGGCTGTGAGAGAACGTGATCAGGTTTGGGGCTCCCACTTTGACTGCACTTTGAGAATGGTTTAGAGAAGAGCAAGAGCAAATGGATTAGAGAGTCATTCAGGAAGGAACACTGGCAGGACTTGGTTACAGATTGACTTTGGGAGCCAAAGAAGAGAGAGATGTCAAGGTTGATTCCTAAGTTTCTGGCATATATTTTGCTAAAACAATTGGACCCACATTAAATTTTAGGTAATTTTGAGATATCTAAGTAGGAACATCGAGAAGGCAATGGGATATACAAGGTTAGATGTAAATGAGAACATATAAAGAGAGGATGTGAAGTGAGAAGAAGGCCTTAAAGCTCCAAAAATGTAAATAACTATATAGAGGAGGAGCCTGCAAAGAAGACCAAGAAAGAGCATCCAGAATTAGGACTCAAATAAAGCTAATGGTGTTGTGACAGCTAAGGAGGGAGAGAGAACAGCAGTGTCAGATGCTACCAAGAGTCAGTGGTATGTGAGACCAAAAAAAAAAAAAAAATCTAGATTATTATCACAGAGTGATGGGTGGGGAAAGACAGAAAGGACTGGATTAAGGAGTGAGTGGGAAAGATGATGAGTGTTGACACTACTGAAAAGTTTTTCTACTAAGAAGAAATGTGGGCTGGAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGAATATGTTTAAAAGGATTCAGTTGAGGGAAGGTTATGTGCAACTTCTCAATTGAAAGAGAAAGGATCCTAGGGGAAGGAATTCAGAAACATTTAGGGGTGGTGGCTTTAGAAAAGAGAGACAGATATCAGCACTGTCCTTAAGTGCCAGGGCCTCAATGTAACCTGTATTTGCCTGATATATATTAATAATTATATATACCATATAATTATAAAGACCTTATAAAGTTCTTAAATAACTAGAGAAGTACTTCTAAATTTCTAGATAATACTACATTTTTCTGAGTATTGTTACATGATTTCTCTTGGTTACTGGTGAAAGAAAGTGCCAGATACATTTCATTTCAGACATGTTTGAGAAAAAAACATTTGGAGAAGACATTTTTCACTATACTTATCTGATGAAAGGTTCTAAACTCTTAGCAGTGTCTCAGGAAAGGGACCCAAGAGTTATTGTAGACTCTTTGCTAGGAATGTTGAATGTATTGGATGTTTTGGCAAAGATCATCCTCAGGAAGAAGCCAAGGTAGGAAATACCAAGCAGATTCAGCCCTGTTTAAATCTATATATTAAAATCCTCGCACATCTGCACGTAATATACCACATCCAAACATAACTCAAGAGAAGCAGCAGAACAGAACAGACAGGATAACTAAGAGGATAATGGGGAATTCCATACATTTTGTAAAGACAGACAAGACCTGCATTCATCTATATATAGTTGGACAGGACAAAGAGTGGGCAAAATGAAAGTCTTTGAAATCAAAGGGAGAATGAGAGGAGAAACAGACCTAGTTTTCATTCATCAGACTTAAGGTAACCTCCTGAAGAATAAAATAGGTCAAATATTTAGGTCAATTAAGAAGAAATAAGGTTTTAGACCTTAATTCCCTAGAAGTAAGTCTGGGAGATGAGCTGTTTGTGAATGACTAAAGCATGTGGGATTAGTTTAGACAGGAAGGATACTGTCATCCTAAGCATCCTGGCCTCATGCTCCCCCAGTCAGACCCAGTCAATGTCCCTTGCTGTCCAGCCTTGTTCCTTGGTCCTCGTTCACTGGCCTCGGACCTGGATATGCCAGAAGCCAGAGCGCATCCAGAAAAAAAATAGTCAGCCTCCCTAGGTGTGACCAGGCCAGTTCTCTCTCCTTGCCTAGTCAGTCTGGCAATCCTAACACCCGTCATTTTAACCTGTCCCCCCAGCCCTCCCCCAGGTTTAGAGCAGCCCTAATATCAGTCCAAGAATCCTGTTCCCCGTCTGCCTTAGCCTGACTTCTGTGGGTCCTGGTACAGGGTCTCTATCAGCCCCGAGTCCACGTCCTTCACCGCAACTCACCTGTCTAGTTCATGTGCTTCTGAGGCCAAACAGCTGTGAAGGGTAGAGCCTTGGGGGCATCTAATGCTATAAGATCCTGCCACCAGGAGACCTCTAACTGCTAAAACAGAAATCTTGCCCCTGGTCCCTGTTCCACCAACCTTTCCCACTTGGTTCTAGACTGTTCCTGACTCTGCTGTTGTCTTATCCTCACAGAAAGTTGAGGAAGCGAGCGGCCAAAGCCTCGGCCCGACGCTCCAAGCCCCTTGGAAGGTAATGGGGCAAGAGCCCCGGGACCTCCTGCTCATCCCTGTGGCCCCAGGAGGTGGATGGATGGAAGGCAGCCTATCCATGTCCATCCCAGAACCCAAGCTGATGAATTAGGGATATGGCTGGAAAATGGCCATTCCAGGAGGGAGGAGTGGGGAGGCAGGCATGCGGGTGGGTAAGTTTTGATTTAGGAAGCACAAGGAGGAAATAATATAGGAATGACTAAGGAGACACCTCCGTATCTTTATACTGCCCCCAAATAGCTTGGACTCCAGCCTCAGCCACCTGCATGCTTCCTCCCCCCACAACTCCTAACCTCCCTTCATTCACCTACATCCCCACACTCTCTCCTCCCTCCACTATTCCTCTCATCTCCTCTCCCCTCCCCCTGGACTGACATCACCAGATTTCTCATCACTGTTGCTGAATCCAGAGAGCAGCATGTATTCCAAAAATACAGTTAAGTGGTATTCAGCAGTGTATGTGGAAAATCTGACTGCCTGCTTTGCCCCTTCCCGTGCTCTGCATGAAGGGTCCTTCCTAGAGACAGAAAGAAGAAAGAATCCTTTGCCTTTCCCGGGTAATGCACCTGACCACTACTGCCACTAACTTCTTTCTCCTTTTTTCAGACCAGTCACCAAGCTTAAAGCCAAACCCCAAACCCGAATGGGCAGGGGGCCTATTAAGAGGTAAATAAAGTTTAGGCTGGGTGGAGAGGAGAGGGAGTGCCAAGTGATGAGTCAGGGGCATCGGGCTGTGGTTAGGAAGGGGTCCAAGAGACGCCTCCACAAGGAGGTGGAGGAGCAGCAGCAACTGTTACAAGCCACCTTACAGATGATTCACCACAATGTAAAGTAAGATCGGCCCTTTTGTTTGGTTTTTTTGTTGTTGTTGTTGGGTTGTGGGTTTGTTTTTTTTTTTTTTTTTTTTTGGCCCATATGTTTTTTGTCTGAGGAATTATGCTCGTCACAGGATTTTTGAAAAATCTCCATAGAAGTTCACCCATTGACTCCTCTTGTTCCACATGCTTATTCATCTTCCCCCAGCAGATTTTAGGAGATACTCTGGCACTCTTGTCCTTCAGATGCCATGCTTGCCTCTCGCCCAAGGAGTTAAGTTTCCCTAAGGGATCAGTGTTCCCATCCTACCTTTATTAATTGTTAAATGGAATAAGTGCTACTGGGTTGGAAGTGAGACTCAGGATCCCCTGTGGAACCTTTCCCAGGGCAGGAGTCAGATGACGGTCCTGGTCCTCTGGCCCAGTTAACACAGTTAGGCTCCCAGTTCCATCATTTTCCTTCTGGGCTCCTTCAGAACCCCAGGGAACAAAAAGCTTCCAATCCCAATGACTGCGTCTCACTTGGCTTCTGAAGGCAGTTCGCGCAAGAAAAGTCCCCTGGAGAGCTCCTTCAGCAGTGTGTGAGGGGTGGAGAAGTAGGCCCTTTCTATTGTCTCCTCCTCTTTTCACAGCATTCCAGGATCACTCAGGGGTCCCAGGCACCACCCCCCCCCACTCCCCAGCTCCTCCCTCTGGTGCCTTCAACAGGCTTTGGCATTGGAGGGTGTTCCCATAGTGCCCTTCCAGCTTAGGGTTGTCTTGCACAACATGGCCATACTCTGGCCTTCCCTGACCCCCACATTAAAGCGACGACCTCTTTCACTTTTATTTTCAGCCACACAGGACTTTGAAAGAATACTAAGTCTCTTTGAGCTTCAGAGTCCACTTATCTTGAGCTTCCAAAGGTATTCTGTAAAGTCTCCAGGCTTCCTTTGTCTGATTTGTCTATAACTTATCCCTCTCTCTGTGTCTTCCTAGCCAGTGGCTTCAAATCATCATATTCTCCTCTGACATCAAGTAATAGAGCACATTACTGTAGTAATTCGCCACCAGACCACCTCACAGGCCCACCCCACCAACACAAGGCCTCATTGGTTCCTTCCCTCTCTGGGTTCAAACAGGCTGTTCTGGGAAGAAAGCACTTCTCTTATTTCATGGCTCACTGCCTTGAAATTTCATTCCCTTCCGTTGGTGTTGATAAGCAAGCCCCCTCATTCTCTCTAGCATCTCTCTGCTGTGTTTCAAAGTTTTAACGTCTCTAATTTAGTCCCATTTTCCTGCTCAGGTGGCTATGGAACATTCTTTCTGTTACATTTAAACTACGGAAGCATGGACTACCTCATTAAAGACTCATACAGTTCAGCTTTAGGTCTGGGGTTATCCTTACCCTTCAGTTGTTCACATTCACTCTCCTTCTCTGGTCATGTGGTCTCTCTTTGTCTTGCATTTGTACATCTTCATTCCTATATATACCAGCTCCAGTCTTTCCTGTGTTCCACCTTCTAGTCTGTTCTTCCTGTAACTGCCCATCATCCTCTGGCCTGGAAGCCCCTCTGGCCTCTAAGAAGCCATGTAGACCCAAGACTTACTCACTTCTTTGCATCCTGACTCATTTAGTTCTTTCAGTCGCAGCGTAATAGAAAGATCTGCTTACTCTGGCCATTCAGGCTTCCTGTTAGCTACTCCCTCCTGCCTATCTCTTCCAGATGGTCAGTCCTGGCTTCCTAATCTCTTTGCACAGCAGCTTCAGCCTCCACGGGGGCCAGCTCCCTGAAACCACACAGAACAAGGTCTCTGTCAGGCAAGTCAAAACTAGCTTTCCTTCCCACAGGGTTCTTCTGTTGCAGAACATACCCAAGGAGCCCCCTGTTTGGGCTCTTTCAGCCTGGAAACTCCCCATTACCGTTGTCTCTTTGTCTCTGTGTTTTTGCAGAGAAGAGAAGAAGAAGAACTAAAGCGGTCATGAAAGGTTGGGGGATGGTGGAGGCATGGAGCGGGAGGAGGGCTGCAGGCAAAGAGGCAGGAGCACTGTTTCACCCTACTGCTCCCACTCCTGTCCCCCCAG
Seq C2 exon
GCTGCTGGCCCAGCGGCAGCAACACTCCTTTGGTCTGCATGGGGTGGCGTGCGTGGGCACGGAGGCCCACCTCTCCCTCTGCTCTTTGGAATTCTATCGAGCCAATGACACCACCAGGTGCCCGGGGGGGGCCCCTGCGGTGGTGAGCTGTGTGCCAAGCCCTCTCTACGCAGCATCCAGTGGCCAGAAGAAGCAACAGTCGAAGCCTCAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018578:ENSBTAT00000024724:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.164
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(50.0=72.2)
A:
NA
C2:
PF0053013=SRCR=PD(49.0=69.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development